AT3G46900.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : copper transporter 2 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
encodes a member of copper transporter family and functionally complements a high affinity copper transporter mutant in yeast | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
copper transporter 2 (COPT2); FUNCTIONS IN: copper ion transmembrane transporter activity, high affinity copper ion transmembrane transporter activity; INVOLVED IN: copper ion transport, high-affinity copper ion transport; LOCATED IN: anchored to plasma membrane; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Ctr copper transporter (InterPro:IPR007274); BEST Arabidopsis thaliana protein match is: Ctr copper transporter family (TAIR:AT2G26975.1); Has 445 Blast hits to 445 proteins in 119 species: Archae - 0; Bacteria - 0; Metazoa - 186; Fungi - 45; Plants - 164; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:+:17268887..17269363 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 17058.90 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.19 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.38 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 158 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDHDHMHDMP PPSPSSSSMS NHTTPHMMMM HMTFFWGKNT EVLFSGWPGT SSGMYALCLI VIFLLAVIAE WLAHSPILRV SGSTNRAAGL AQTAVYTLKT 101: GLSYLVMLAV MSFNAGVFIV AIAGYGVGFF LFGSTTFKKP SDDQKTAELL PPSSGCVC |
||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)