AT3G46613.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 0.833 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ROTUNDIFOLIA like 4 | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a small is a member of an angiosperm specific gene family. | ||||||||||||||||||||||||
| Computational Description (TAIR10) |
ROTUNDIFOLIA like 4 (RTFL4); CONTAINS InterPro DOMAIN/s: DVL (InterPro:IPR012552); BEST Arabidopsis thaliana protein match is: ROTUNDIFOLIA like 5 (TAIR:AT5G59510.1); Has 2715 Blast hits to 451 proteins in 97 species: Archae - 0; Bacteria - 47; Metazoa - 671; Fungi - 301; Plants - 174; Viruses - 0; Other Eukaryotes - 1522 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:17165791..17166225 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 16107.20 Da | ||||||||||||||||||||||||
| IEP (calculated) | 11.34 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.55 | ||||||||||||||||||||||||
| Length | 144 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDVEKLWNHT KKDSIFQTTH FSSSSKPFFT RSFSTKTSSS PSSKSHFTRS FSTKPSSSSS SSDLIFRRSF SAKPKTSKSL LLSRSCSTKS SADLSSKSSS 101: LSRILSKKGA SVTGKCFKVA KEHKSRFYII KRCVLMLVCW HKHS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)