AT3G46550.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 ASURE: plasma membrane What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Fasciclin-like arabinogalactan family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Isolated in a screen for salt hypersensitive mutants. Mutants have thinner cell walls, abnormal siliques and root growth is inhibited under salt stress. The gene has similarity to arabinogalactan proteins and domains associated with cell adhesion. | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
salt overly sensitive 5 (SOS5); FUNCTIONS IN: polysaccharide binding; INVOLVED IN: multidimensional cell growth, cell adhesion, response to stress; LOCATED IN: anchored to plasma membrane, plasma membrane, external side of plasma membrane, anchored to membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: FAS1 domain (InterPro:IPR000782); BEST Arabidopsis thaliana protein match is: FASCICLIN-like arabinogalactan protein 8 (TAIR:AT2G45470.1); Has 1011 Blast hits to 932 proteins in 123 species: Archae - 6; Bacteria - 104; Metazoa - 24; Fungi - 33; Plants - 770; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:17136612..17137874 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 44241.20 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.66 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.37 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 420 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MANVISISHF TLLALPYLLL LLSSTAAAIN VTAVLSSFPN LSSFSNLLVS SGIAAELSGR NSLTLLAVPN SQFSSASLDL TRRLPPSALA DLLRFHVLLQ 101: FLSDSDLRRI PPSGSAVTTL YEASGRTFFG SGSVNVTRDP ASGSVTIGSP ATKNVTVLKL LETKPPNITV LTVDSLIVPT GIDITASETL TPPPTSTSLS 201: PPPAGINLTQ ILINGHNFNV ALSLLVASGV ITEFENDERG AGITVFVPTD SAFSDLPSNV NLQSLPAEQK AFVLKFHVLH SYYTLGSLES ITNPVQPTLA 301: TEEMGAGSYT LNISRVNGSI VTINSGVVLA VVTQTAFDQN PVSVFGVSKV LLPKELFPKS GQPVATAPPQ EISLSPESSS EQPSRLVSPP REIVSSGAVK 401: RPLGFLVLWC WCIAFCYVLV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)