AT3G46190.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:peroxisome 0.646 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : TRAF-like family protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
TRAF-like family protein; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: TRAF-like family protein (TAIR:AT1G58270.1); Has 980 Blast hits to 953 proteins in 88 species: Archae - 0; Bacteria - 0; Metazoa - 314; Fungi - 12; Plants - 614; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:16965889..16967345 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 33427.00 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 4.30 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.46 | ||||||||||||||||||||||||||||
| Length | 291 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSKYELKVTS KGSQKHEKLK TALLPYWRER PPTTYSVTFE SFGKMMELVN NGYYESLPFT VDGINWTFKI YPNGNSDTTR GLIYLYVKID DSSITDPPLD 101: VYAEIKFFVY NYGISEYYTY QEVEPVKFDS VQQEWGRWID VFVAQRNKSE VFSYDENISN PVFTWSLPNF STLTLDSYTS DPFSSGDRNW VLKVYPNGDG 201: VGKDNSLSLY LLSESNEKNY VRATLRVLNQ IGSDNVEKPV EGWPNAAENG WGYQEFIPLA DLQDATKGFV VDDLLEVEVE IMAISKQTPI N |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)