AT3G46170.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:peroxisome 0.644 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : NAD(P)-binding Rossmann-fold superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: response to cadmium ion; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Short-chain dehydrogenase/reductase, conserved site (InterPro:IPR020904), NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G55290.1); Has 125654 Blast hits to 125445 proteins in 3692 species: Archae - 993; Bacteria - 81123; Metazoa - 7022; Fungi - 6581; Plants - 3149; Viruses - 5; Other Eukaryotes - 26781 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:-:16952723..16953589 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 30989.80 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.01 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.16 | ||||||||||||||||||||||||||||||||||||||||
| Length | 288 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSNHQTLTFV FGEKEVLKQL EPWCELKDKV VLVTGASSGI GREICLDLGK AGCKIIAVAR RVDRLNSLCS EINSSSSTGI QAAALKLDVT SDAATIQKVV 101: QGAWGIFGKI DALINNAGIR GNVKSSLDLS KEEWDNVFKT NLTGPWLVSK YVCVLMRDAK LGGSVINISS IAGIRGILPG ALAYACSKIG VDTMSKMMAV 201: ELGVHKIRVN SIAPGIFKSE ITQGLMQKEW FKNVTERTVP LKLQQTVDPG ITSLVRYLIH DSSQYISGNT YIVDSGATLP GVPIFSSL |
||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)