AT3G45950.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pre-mRNA splicing Prp18-interacting factor | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pre-mRNA splicing Prp18-interacting factor; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, CCHC-type (InterPro:IPR001878), Pre-mRNA splicing Prp18-interacting factor (InterPro:IPR021715); BEST Arabidopsis thaliana protein match is: Pre-mRNA splicing Prp18-interacting factor (TAIR:AT1G65660.1); Has 528 Blast hits to 525 proteins in 189 species: Archae - 0; Bacteria - 0; Metazoa - 260; Fungi - 133; Plants - 63; Viruses - 0; Other Eukaryotes - 72 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:16889461..16890618 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 44161.40 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 9.12 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.92 | ||||||||||||||||||||||||||||
| Length | 385 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MATASVAFKS RKDHRKQKEL EEARKAGLAP AEVDEGGKEI NLHIPKYLTI PPLYAKSEKP SLKHQKNWKT KPVSTTSYYD RGAKTYQAEK YRKGACQNCG 101: AMTHDVKTCM ERPRKVGAKY TDKNIAPDEK IESLEFDYDG KRDRWNGYDP SSYCHVRDRH EAKENAREKY LNEQQLIAKL EEKNIDGEEE DLRVDEAKID 201: ESMQVDFAKV KKRVRTTDGG SKGTVRNLRI REDPAKYLLN LDVNSAYYDP KSRSMREDPL PYTDPNEKFC LRDNQYRNSG QAIEFKQQNM YSCEAFDKGQ 301: DIHMQAAPSQ AELCYKRVKI AKEKLNSQRK DAIIAKYGDA AAKDDIPMEL LLGQSKLIKT SQANGIKLVP NVFVNLCFLV FVFIS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)