AT3G45570.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 0.999 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : RING/U-box protein with C6HC-type zinc finger domain | ||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
RING/U-box protein with C6HC-type zinc finger domain; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box protein with C6HC-type zinc finger (TAIR:AT3G45580.1); Has 1459 Blast hits to 1449 proteins in 169 species: Archae - 0; Bacteria - 0; Metazoa - 538; Fungi - 228; Plants - 505; Viruses - 2; Other Eukaryotes - 186 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr3:-:16725094..16726116 | ||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 35364.90 Da | ||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 4.66 | ||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.09 | ||||||||||||||||||||||||||||||||||||||||
Length | 312 amino acids | ||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MEDDPKPAGE IKIESYSLYF KGLVSEETTE LLAGFAVAIC DKDDNLLFQM KEQVHDSRVV TLMEVELMAL KRGLTEVVRL GIDHISIYCD HYQIFELVME 101: RSVSEQENIL MLMDDVQRIR KRLTSSVPVL VMTRNQIEFV YELAMETIVS EIRIDMPDHN KTCSICSGDN IEPEQIFSVA LCGHEFCMEC VKQHIEVKLL 201: SGGVPRCLHY QCESNLTLGS CGNILTSKLK AMWELRIEEE SIPVAERVYC PNPLCSSLMS VTKLSNSTRE DVTMRTCVKC GEPFCINCKL PWHSNLSCND 301: YKSLGPNPTA DI |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)