AT3G45560.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.967 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : zinc finger (C3HC4-type RING finger) family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box protein with C6HC-type zinc finger (TAIR:AT3G45580.1); Has 537 Blast hits to 473 proteins in 76 species: Archae - 0; Bacteria - 6; Metazoa - 55; Fungi - 41; Plants - 391; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:16719630..16722674 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 57168.60 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.64 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.16 | ||||||||||||||||||||||||||||||||||||
| Length | 503 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MYDLKPSPFH MNRLYFKGFV SEETKGFGVA ICDQEDKLLY HIKGSRHHDS AITVLEAELT ALKRGLIEAV GLGINHISFY CDHDQIFELV MGISVPEQDN 101: IALLMDDVQR IRKQFTSSIP VLMTRNQAKF AYKLAMETIV SEISIDMAPS QRKTCGICFN DDFKAEHMFS VDLCGHQFCV ECMTQYIKVR LLEESEMRCP 201: HYQCESKLTV VRCANLLTPE LREMWEHRSQ KESVVVADKA YCQIECAWLL CQMEFRDGAL DVVSLIASAA KFRGITTCRA SNTRDADISF ATHVEMNGSK 301: EVAFISERRC LWSMALLQGF SERGTTGFAV AICDQENKLL YHTKGSLHHD STITILEAEL TSLKQGLTEA VRLGITYIKI YCDHTKLFDL VMGTSALEDN 401: IALLMDDVHR IRKQLKSSNP ILETRTQISM LINLQWKPTE LNGVIKRAPS RYIPFAPKPP LKRPPSREKH ARQRLVKTIH SPRIISGKIG SFMGLSEMIK 501: ENL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)