AT3G45480.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.896 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RING/U-box protein with C6HC-type zinc finger | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RING/U-box protein with C6HC-type zinc finger; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: sepal; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, C6HC-type (InterPro:IPR002867); BEST Arabidopsis thaliana protein match is: IBR domain containing protein (TAIR:AT3G45460.1); Has 2300 Blast hits to 2269 proteins in 201 species: Archae - 0; Bacteria - 0; Metazoa - 900; Fungi - 395; Plants - 659; Viruses - 0; Other Eukaryotes - 346 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:16683263..16684592 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 43687.10 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.23 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.22 | ||||||||||||||||||||||||||||||||||||||||
| Length | 382 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAPNPTGKPS PDGSSSDSYN LYFKGSLAGF GVAIYREEDD SILFKKKVSL HYPDFTAWEA ELMALKLGLT KAVSFRINHI SMFFDNPEIF ELVMGRSVPK 101: DKKIALIMDE VQRIRQQFSS SIPFLVASNE IKFVYKLAKE TLVSNISIPR PQKKTCGNCF NDGIKGENMF SADLCSHYFC VECMKEHIEV SLNEGGLPRC 201: PHDGCTSNLT LRSCDHLLTP KQREMWEKRI KEESIPVCDR FHCPNPRCWA LMSKTELTES TEEDGVRRCC YKCRKHFCIN CKVPWHSNLS CKEHKSSGRE 301: PITTVWRQCR SCLHKIKLSE ERMPVTCRCG YKFCYACGAQ WKLGGCCSHH LQEVMDWVAI VLIFLAFVSL LVVSFMLIVK YS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)