AT3G45460.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:cytosol 0.623 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : IBR domain containing protein | ||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
IBR domain containing protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C6HC-type (InterPro:IPR002867); BEST Arabidopsis thaliana protein match is: RING/U-box protein with C6HC-type zinc finger (TAIR:AT3G45480.1); Has 1686 Blast hits to 1674 proteins in 179 species: Archae - 0; Bacteria - 0; Metazoa - 656; Fungi - 285; Plants - 509; Viruses - 0; Other Eukaryotes - 236 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr3:-:16678680..16680043 | ||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 44782.60 Da | ||||||||||||||||||||||||||||||||
IEP (calculated) | 8.03 | ||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.23 | ||||||||||||||||||||||||||||||||
Length | 389 amino acids | ||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MEKEGTLERD YGRNPTGKPS PGDFHSDTYN LYFKGLVREK TSAQLSAGFE VAIFREEDEY LLFQMKGSLH DSTVTVLEAE LMALKRGLTE AVSLGINHIS 101: ICCDRLELYE LVMGRLAPEK ENIALLMDDV QCIRRELTSS IPVTVTENQA KFAFKLAKES ISIRTPPTEQ KACGEVNIEH ELMFSVALCR HQFGVEWMKQ 201: HIEVRLIEGD VPRCPHDGCK SILSLKSCSH LLTPKLEEMW EHRIKEEFIP VCDRFHCPNP RCWALMSKTE LVESTEDGVR RCCFKCRKAF CINCKVLWHS 301: DLSCKEYKTL GRNPKTISRQ CKKCQHMIKL SHKTINVYCR CGYSFCYTCG AQWKLGGCRH HNQMVAAVLV LVFFFIFHSM IMWSISRRV |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)