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AT3G45460.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.623
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : IBR domain containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
IBR domain containing protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C6HC-type (InterPro:IPR002867); BEST Arabidopsis thaliana protein match is: RING/U-box protein with C6HC-type zinc finger (TAIR:AT3G45480.1); Has 1686 Blast hits to 1674 proteins in 179 species: Archae - 0; Bacteria - 0; Metazoa - 656; Fungi - 285; Plants - 509; Viruses - 0; Other Eukaryotes - 236 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XS1HeggNOG:KOG1812EMBL:CP002686EMBL:DQ446737
EnsemblPlants:AT3G45460EnsemblPlants:AT3G45460.1entrez:823686GeneID:823686
GO:GO:0004842GO:GO:0016021GO:GO:0046872Gramene:AT3G45460.1
hmmpanther:PTHR11685hmmpanther:PTHR11685:SF107InterPro:IPR002867InterPro:IPR031127
KEGG:ath:AT3G45460PANTHER:PTHR11685Pfam:PF01485Pfam:PF13456
PhylomeDB:Q1PEI1Proteomes:UP000006548RefSeq:NP_190132.2SMART:SM00647
SMR:Q1PEI1STRING:3702.AT3G45460.1SUPFAM:SSF57850TAIR:AT3G45460
TMHMM:TMhelixUniGene:At.53755UniProt:Q1PEI1
Coordinates (TAIR10) chr3:-:16678680..16680043
Molecular Weight (calculated) 44782.60 Da
IEP (calculated) 8.03
GRAVY (calculated) -0.23
Length 389 amino acids
Sequence (TAIR10)
(BLAST)
001: MEKEGTLERD YGRNPTGKPS PGDFHSDTYN LYFKGLVREK TSAQLSAGFE VAIFREEDEY LLFQMKGSLH DSTVTVLEAE LMALKRGLTE AVSLGINHIS
101: ICCDRLELYE LVMGRLAPEK ENIALLMDDV QCIRRELTSS IPVTVTENQA KFAFKLAKES ISIRTPPTEQ KACGEVNIEH ELMFSVALCR HQFGVEWMKQ
201: HIEVRLIEGD VPRCPHDGCK SILSLKSCSH LLTPKLEEMW EHRIKEEFIP VCDRFHCPNP RCWALMSKTE LVESTEDGVR RCCFKCRKAF CINCKVLWHS
301: DLSCKEYKTL GRNPKTISRQ CKKCQHMIKL SHKTINVYCR CGYSFCYTCG AQWKLGGCRH HNQMVAAVLV LVFFFIFHSM IMWSISRRV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)