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AT3G45240.3
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.545
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : geminivirus rep interacting kinase 1
Curator
Summary (TAIR10)
Encodes a geminivirus Rep interacting kinase (GRIK; GRIK1/AT3G45240, GRIK2/AT5G60550). GRIKs are SnRK1 (SNF1-related kinases) activating kinases. Both GRIKs specifically bind to the SnRK1 catalytic subunit and phosphorylate the equivalent threonine residue in its activation loop in vitro.
Computational
Description (TAIR10)
geminivirus rep interacting kinase 1 (GRIK1); CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Calcium/calmodulin-dependent protein kinase kinase (InterPro:IPR020657), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: geminivirus rep interacting kinase 2 (TAIR:AT5G60550.1).
Protein Annotations
eggNOG:ENOG410YHHFeggNOG:KOG0585EMBL:CP002686EnsemblPlants:AT3G45240
EnsemblPlants:AT3G45240.3entrez:823660ExpressionAtlas:F4J5I5GeneID:823660
GO:GO:0004674GO:GO:0005524Gramene:AT3G45240.3hmmpanther:PTHR24347
hmmpanther:PTHR24347:SF1InterPro:IPR000719InterPro:IPR008271InterPro:IPR011009
InterPro:IPR017441InterPro:IPR020636iPTMnet:F4J5I5PANTHER:PTHR24347
PaxDb:F4J5I5Pfam:PF00069Pfscan:PS50011PRIDE:F4J5I5
PROSITE:PS00107PROSITE:PS00108PROSITE:PS50011ProteinModelPortal:F4J5I5
Proteomes:UP000006548RefSeq:NP_001190013.1scanprosite:PS00107scanprosite:PS00108
SMART:SM00220SMR:F4J5I5STRING:3702.AT3G45240.1SUPFAM:SSF56112
TAIR:AT3G45240tair10-symbols:GRIK1UniGene:At.21488UniProt:F4J5I5
Coordinates (TAIR10) chr3:-:16570774..16572902
Molecular Weight (calculated) 44200.80 Da
IEP (calculated) 4.57
GRAVY (calculated) -0.54
Length 393 amino acids
Sequence (TAIR10)
(BLAST)
001: MFCDSFAFAQ VMSCFGCFGG SERSRHSPNP YDDDTYSHDS GETSNPGGDD EEGEEEEEVE ELSRSKRSEE ILKCKLQNGL VCRQFPVKET NKLTRGEDED
101: GNKTINEFVR ERKIGSGSYG KVVLYRSTVD DKHYAIKAFH KSHLSRLRVA PSETAMGDVL REVMIMKTLE HPNIVNLIEV IDDPEFDDFY MVLEYVDGKW
201: AYDDSGPPGA LGEITARKYL RDVVAGLMYL HAHNVIHGDI KPDNLLVTST GRVKIGDFSV SQDDDDQLRR SPGTPVFTAP ECCLGITYSG RSADTWAVGV
301: TLYCMILGQY PFLGDTLQDT YDKIVHNPLI IPEGLNPRLR DLIEGLLCKD PNQRMTLKAV AEHPWITGED GAISEYCCWC KRKAEEEEDQ NHS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)