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AT3G45030.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:30961429 (2019): nucleus
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:27177187 (2016): nucleus
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25641898 (2015): plasma membrane
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22550958 (2012): plastid
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:21841088 (2011): mitochondrion
  • PMID:21166475 (2011): cytosol
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribosomal protein S10p/S20e family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal protein S10p/S20e family protein; FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, small ribosomal subunit; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: Ribosomal protein S10, conserved site (InterPro:IPR018268), Ribosomal protein S10, eukaryotic/archaeal (InterPro:IPR005729), Ribosomal protein S10 (InterPro:IPR001848); BEST Arabidopsis thaliana protein match is: Ribosomal protein S10p/S20e family protein (TAIR:AT5G62300.2); Has 7518 Blast hits to 7518 proteins in 2618 species: Archae - 271; Bacteria - 4774; Metazoa - 380; Fungi - 145; Plants - 182; Viruses - 0; Other Eukaryotes - 1766 (source: NCBI BLink).
Protein Annotations
BioGrid:21595BioGrid:8958eggNOG:COG0051eggNOG:KOG0900
EMBL:AB019235EMBL:AF325017EMBL:AF370460EMBL:AL353992
EMBL:AY085673EMBL:AY096646EMBL:AY114024EMBL:CP002686
EMBL:CP002688EMBL:Z26188EMBL:Z26558EMBL:Z27060
EnsemblPlants:AT3G45030EnsemblPlants:AT3G45030.1EnsemblPlants:AT5G62300.1EnsemblPlants:AT5G62300.2
entrez:823638entrez:836351Gene3D:3.30.70.600GeneID:823638
GeneID:836351Genevisible:P49200GO:GO:0003723GO:GO:0003735
GO:GO:0005618GO:GO:0005829GO:GO:0006412GO:GO:0022627
Gramene:AT3G45030.1Gramene:AT5G62300.1Gramene:AT5G62300.2HAMAP:MF_00508
HOGENOM:HOG000270245InParanoid:P49200InterPro:IPR001848InterPro:IPR005729
InterPro:IPR018268InterPro:IPR027486KEGG:ath:AT3G45030KEGG:ath:AT5G62300
KO:K02969OMA:YQPMKPGPaxDb:P49200Pfam:P49200
Pfam:PF00338PhylomeDB:P49200PRIDE:P49200PRINTS:PR00971
PRO:PR:P49200PROSITE:PS00361ProteinModelPortal:P49200Proteomes:UP000006548
Reactome:R-ATH-156827Reactome:R-ATH-1799339Reactome:R-ATH-72689Reactome:R-ATH-72695
Reactome:R-ATH-72702Reactome:R-ATH-72706Reactome:R-ATH-975956Reactome:R-ATH-975957
RefSeq:NP_001078781.1RefSeq:NP_190089.2RefSeq:NP_201036.1scanprosite:PS00361
SMART:SM01403SMR:P49200STRING:3702.AT5G62300.1SUPFAM:SSF54999
TAIR:AT3G45030TAIR:AT5G62300TIGRfam:TIGR01046TIGRFAMs:TIGR01046
UniGene:At.1758UniGene:At.23495UniProt:P49200
Coordinates (TAIR10) chr3:-:16471606..16472312
Molecular Weight (calculated) 13879.10 Da
IEP (calculated) 10.44
GRAVY (calculated) -0.39
Length 124 amino acids
Sequence (TAIR10)
(BLAST)
001: MATAYQPMKP GKAGLEEPLE QIHKIRITLS SKNVKNLEKV CTDLVRGAKD KRLRVKGPVR MPTKVLKITT RKAPCGEGTN TWDRFELRVH KRVIDLFSSP
101: DVVKQITSIT IEPGVEVEVT IADS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)