AT3G44930.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 0.572 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : cation/H+ exchanger 10 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
member of Putative Na+/H+ antiporter family | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
cation/H+ exchanger 10 (CHX10); FUNCTIONS IN: monovalent cation:hydrogen antiporter activity, sodium:hydrogen antiporter activity; INVOLVED IN: cation transport; LOCATED IN: integral to membrane; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger (InterPro:IPR006153); BEST Arabidopsis thaliana protein match is: cation/H+ exchanger 11 (TAIR:AT3G44920.1); Has 3267 Blast hits to 3245 proteins in 1126 species: Archae - 161; Bacteria - 2335; Metazoa - 0; Fungi - 113; Plants - 528; Viruses - 0; Other Eukaryotes - 130 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:16402058..16404672 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 88148.40 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.51 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.40 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 783 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNTTTYIGDC RISFFNISSQ GFWDNLKSPD VVFGYSLPLL EIQIILIFFC IVMSHMFLRC IGISQIASYM IAGIVLGPQL FDVLEKSSGK LSVDPALDGI 101: AALRCISVFG TLMFTFLMTV RTSRRVAFHS GKLPVVIGIV SFFAPLFGLG FQNFFSDNID PHYMPLTKAL GERTAIVITQ SSILLPSTTY ILLELKIINS 201: ELGRLALSAC VINDILGIFS MIVASIQATY IHVSHATAYR DTVAVIIFFL VVFLVFKPMV QWVIDRTPED KPVEDMYIHA VIITALASAA YFVFFNMKYI 301: LGPLMIGIII PEGPPLGSAL EAKFERLTMN VFLPISITFS AMRCDGARIL SQFNDIFFNI FLTFLILVIK LVACLAPCLY YKLPLSESLA VSFILSYKSF 401: ADFVLYEAVL DDTYISQATY SFLILYSLLN AGIVPTVLRR MYDPRRKYVN YQKRDILHLE RNSDLRILTC LHKPENVSET IAFLQLLSSP NLDFPIAVTV 501: LHLVKLVGQI NPIIVSHDKK LKRLNKDSYI HTANLAFRQF VLESLESVTV TTFTAFSHEN LMHEDICTLA LDKTTSMIVV PSGRKWTVDG LFESDNTAIR 601: HLNQSLLDRA PCSIGILVDR GQFSRKSIVT SKKRYIIDVG VLFIGGKDDR EALSLVKRMK NNPRIRVTVI RLVFDHEIES DWDYILDNEG LKDLKSTEDN 701: KDIDYIERIV TSSVEVVKAV QLLAEEYDLM VVGRDHDMTS QDLSGLMEWV ELPELGVIGD LLAARDLSSK VSVLVVQQQQ QRT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)