AT3G44910.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 0.480 plasma membrane 0.385 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : cation/H+ exchanger 12 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
member of Putative Na+/H+ antiporter family | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
cation/H+ exchanger 12 (CHX12); FUNCTIONS IN: monovalent cation:hydrogen antiporter activity, sodium:hydrogen antiporter activity; INVOLVED IN: cation transport; LOCATED IN: integral to membrane; EXPRESSED IN: male gametophyte, pollen tube; CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger (InterPro:IPR006153); BEST Arabidopsis thaliana protein match is: cation/H+ exchanger 10 (TAIR:AT3G44930.1); Has 1561 Blast hits to 1533 proteins in 481 species: Archae - 61; Bacteria - 809; Metazoa - 0; Fungi - 120; Plants - 525; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:-:16392064..16394579 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 85824.50 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.38 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.38 | ||||||||||||||||||||||||||||||||||||||||
| Length | 770 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNTTSYIRGC IPLVFNISSF GFWENLKSPD VIFGYSLPLM EFQILLIFVF IIIIHSFLKS FGISPIPSYM LAGLILGPQL FNLREVSSRK LSWDPALDGN 101: GPLRGLSVCG NIMLAFFMTV KISRRLAFNN GWLPIVIGTL SFIVPFLGGF CVRNLHTDNI DPYYMSPNKV LAERIVVISS QSSILLPTVV HFLSELKILN 201: SELGRLVLSA SLINDIFAST VSIFAYLVGT YKNISPMTAY RDLIAVIILI LVAFCVLRPV VEWIVERTPE GKPVADVYVH AVVLSVIASA AYSSFFNMKY 301: LLGPFLLGII IPEGPPIGSA LEAKYEALTM NVLIPISITF STMRCDVMKI VYQYDDIWYN IFLMTFTGFL KMATGMVPCL YCKIPFKEAI AASLLLCSKS 401: FSEIFLYEST YDDSYISQAT YTFLITCALI NSGIIPTALA GLYDPKRKYV GYQKKNIMNL KPDSDLRILT CIHRPENISA AISFLQFLPS TIVVTVLHLV 501: KLVGKTVPVL ISHNKQINRV VTNSYIHTAN LAFSQLESVT MTMFTAITHE NLMHDEICKV ALEQATSIII VPSGRKWTVD GAFESEDEAI RRLNESLLKS 601: ASCSIGILVD RGQLSLKGTR KFNIDVGVIF IGGKDDREAL SLVKKMKQNP RVKITVIRLI SDRETESTNW DYILDHEVLE DLKDTEATNS IAYTERIVTG 701: GPEVATTVRS LSEDYDLMVV GRDHGMASPD FDGLMEWVEL PELGVIGDLL ASRELDSRVS VLVVQQQQQT |
||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)