AT3G44900.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 0.769 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : cation/H+ exchanger 4 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
member of Putative Na+/H+ antiporter family | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
cation/H+ exchanger 4 (CHX4); FUNCTIONS IN: monovalent cation:hydrogen antiporter activity, sodium:hydrogen antiporter activity; INVOLVED IN: cation transport; LOCATED IN: integral to membrane; EXPRESSED IN: embryo, male gametophyte, leaf, pollen tube; EXPRESSED DURING: D bilateral stage; CONTAINS InterPro DOMAIN/s: Phospholipid/glycerol acyltransferase (InterPro:IPR002123), Cation/H+ exchanger (InterPro:IPR006153); BEST Arabidopsis thaliana protein match is: cation/H+ exchanger 3 (TAIR:AT5G22900.1); Has 3718 Blast hits to 3692 proteins in 1177 species: Archae - 142; Bacteria - 2765; Metazoa - 0; Fungi - 116; Plants - 604; Viruses - 0; Other Eukaryotes - 91 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:16388724..16391360 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 92013.30 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.34 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.34 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 817 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEFNGDRIPY LRDTWRDANM ICGILPINPS SSGLWPSPKL PDPQANIEFW NYMFPHVQII FLIVTILWQF FHFFLRRLGM IRFTSHMLTG ILLSKSFLKE 101: NTPARKFLST EDYKETLFGL VGACSYMMFW FLMGVKMDLS LIRSTGRKAV AIGLSSVLLS ITVCALIFFL ILRDVGTKKG EPVMSFFEII FIYLIQCLSS 201: FPVIGNLLFE LRLQNSELGR LAMSSAVISD FSTSILSAVL VFLKELKDDK SRLGSVFIGD VIVGNRPMKR AGTVVLFVCF AIYIFRPLMF FIIKRTPSGR 301: PVKKFYIYAI IILVFGSAIL ADWCKQSIFI GPFILGLAVP HGPPLGSAIL QKFESVVFGT FLPFFVATSA EEIDTSILQS WIDLKSIVIL VSVSFIVKFA 401: LTTLPAFLYG MPAKDCIALS LIMSFKGIFE FGAYGYAYQR GTIRPVTFTV LSLYILLNSA VIPPLLKRIY DPSRMYAGYE KRNMLHMKPN SELRILSCIY 501: KTDDIRPMIN LLEATCPSRE NPVATYVLHL MELVGQANPV LISHRLQTRK SENMSYNSEN VVVSFEQFHN DFFGSVFVST YTALSVPKMM HGDICMLALN 601: NTTSLIILPF HQTWSADGSA IVSDSLMIRQ LNKSVLDLSP CSVGIFVYRS SNGRRTIKET AANFSSYQVC MLFLGGKDDR EALSLAKRMA RDSRITITVV 701: SLISSEQRAN QATDWDRMLD LELLRDVKSN VLAGADIVFS EEVVNDANQT SQLLKSIANE YDLFIVGREK GRKSVFTEGL EEWSEFEELG IIGDLLTSQD 801: LNCQASVLVI QQQQQMI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)