AT3G44800.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.989 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Meprin and TRAF (MATH) homology domain-containing protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Meprin and TRAF (MATH) homology domain-containing protein; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: TRAF-like family protein (TAIR:AT3G44790.1); Has 1589 Blast hits to 1202 proteins in 141 species: Archae - 4; Bacteria - 57; Metazoa - 379; Fungi - 22; Plants - 973; Viruses - 1; Other Eukaryotes - 153 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:16343333..16346027 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 63857.80 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.62 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.32 | ||||||||||||||||||||||||||||||||||||
| Length | 564 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGYEKFTWVI KNFSSLQSEY IKSDIFVIGG CKWCLLAYPN GKQNASYLSL YLDGPTLKTL PCGCRRRIRF RLTVVNQLSE NLSRRGEGKR WFDKKLPLCG 101: YEEVLLLTKL NAKHGGFLVN NEVKIVAEVD VLEVIGKLDV SKESQEVIKP RKRMRLYGDG GAVSSHLHKE TSSVDVNGFQ VLPSQAESVK RIFERHPYMA 201: LEFRAKNQQL RASCINVLLS LIKTLCQSLQ DISIDDLGQT EQVLTFLQNS GFKVDWLERK LEEVKEKKIQ EHIGKSRMQG LEEDLKVFKK KCSDIEALLE 301: KEKEELKGLK QKCSDIEALL EKEKGKVLAA AARTPLTLDR MNILIGYREM ISLTKLNAKK GGFLVNNKVK IVVEVDVLQV VGGLDVSQEV TQPLKRIRLN 401: DDGAASTHLQ TIDVNGFLVL ASQVESVKRI FESHPEMTLT FRANNQQLRT SCINVLLNLI ETMCMSPQNL SIADLGQTEQ ALTYLKNSGF KVDWLERKLE 501: EVTEKKIQEH IGKSRMQGLE EDLKEELKDL KQKCSDTEAL LEKEKTKVLA AARAPPLTLD DVVS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)