AT3G44790.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.903 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : TRAF-like family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
TRAF-like family protein; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: Meprin and TRAF (MATH) homology domain-containing protein (TAIR:AT3G44800.1); Has 1098 Blast hits to 995 proteins in 133 species: Archae - 10; Bacteria - 75; Metazoa - 209; Fungi - 22; Plants - 634; Viruses - 0; Other Eukaryotes - 148 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:16328792..16330265 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 37265.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.10 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.42 | ||||||||||||||||||||||||||||||||||||
| Length | 324 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGYEKFTWVI KNFSSLQSKY INSDKFVIGG CKWFLKGYQN ANYLSLFLMV ATSKTLPCGW RRYTRFRLTV VNQLSDELSQ QRETETWFDQ NVVLSGNRHM 101: ISLTKLNAKK GGFLVNNEVK IVVEVDVLQV IGKLDVSEGS QEVTQPLKRI RLNDDGVSVK QSIDVNGFQV LPSQVESVKR IFERHPNMAL EFRAKNQHVR 201: TSCMNVLLSL IDTLCQSLQD ISIDDLGQAE KALRYLKDSD FKVDWLERKL EEVKEKKMEE QIGKSRMQEL EEELKIFKQK CSDIEAQLEK EKQKCSDIEA 301: LLEKEKAKSL AAARAPPLTL DDVV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)