AT3G44700.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.490 cytosol 0.455 What is SUBAcon? |
|
||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Plant protein of unknown function | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||
| Computational Description (TAIR10) |
Plant protein of unknown function; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT3G44710.1); Has 1313 Blast hits to 861 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1313; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:-:16236343..16237736 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 42725.70 Da | ||||||||||||||||||||||||
| IEP (calculated) | 7.67 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.18 | ||||||||||||||||||||||||
| Length | 368 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNHREEAKRA NNDEDNGGID IVVEKSHDLI SGGSVPKLLK KSAGGEKCCI FRIHQRLRNN NYKDAYEPRV LSIGPYHHGK EHLQMIQEHK HRFLGIFMDE 101: AQKKGVDMKD LIEAVSELEE DIRESYSESL YNGDVSGRKK LIDMMVLDCC FILILFLVVA RKVSYPERVK DPIFGMKWIL TAKGVTYYFW RIRGIKFELR 201: NNAKTLLDIR HKRNLLEIPP MIFDEFLILF FFNCVAFEDF YAYCTKHITS YVFFMGCLLE NEDDARLLCR KGIITNCIGS VNEISQFYKV IGTDSHFYLN 301: ASYLADVFEG VNEYSSRGWH AYWSVFKNTQ LTYDTPRTCL SCCTGLTILL LTTLQAVFAV YAYYRPPK |
||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)