AT3G44340.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 1.000 ASURE: golgi What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : clone eighty-four | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
homologous to yeast and animal Sec24 proteins; expression in yeast cells enhances their survival under oxidative stress conditions. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
clone eighty-four (CEF); FUNCTIONS IN: transporter activity, zinc ion binding; INVOLVED IN: response to oxidative stress, vesicle-mediated transport; LOCATED IN: COPII vesicle coat, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Sec23/Sec24, helical domain (InterPro:IPR006900), Sec23/Sec24 beta-sandwich (InterPro:IPR012990), Sec23/Sec24, trunk domain (InterPro:IPR006896), Zinc finger, Sec23/Sec24-type (InterPro:IPR006895), Gelsolin domain (InterPro:IPR007123); BEST Arabidopsis thaliana protein match is: Sec23/Sec24 protein transport family protein (TAIR:AT4G32640.2); Has 125534 Blast hits to 60845 proteins in 1833 species: Archae - 62; Bacteria - 18823; Metazoa - 61754; Fungi - 17926; Plants - 11260; Viruses - 2145; Other Eukaryotes - 13564 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:16011923..16019873 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 117698.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.23 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.34 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1096 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MAAPVPPGAY RPNNNQQNSG GPPNFVPGSQ GNPNSLAANM QNLNINRPPP PMPGSGPRPS PPFGQSPQSF PQQQQQQPRP SPMARPGPPP PAAMARPGGP 0101: PQVSQPGGFP PVGRPVAPPS NQPPFGGRPS TGPLVGGGSS FPQPGGFPAS GPPGGVPSGP PSGARPIGFG SPPPMGPGMS MPPPSGMPGG PLSNGPPPSG 0201: MHGGHLSNGP PPSGMPGGPL SNGPPPPMMG PGAFPRGSQF TSGPMMAPPP PYGQPPNAGP FTGNSPLSSP PAHSIPPPTN FPGVPYGRPP MPGGFPYGAP 0301: PQQLPSAPGT PGSIYGMGPM QNQSMTSVSS PSKIDLNQIP RPGSSSSPIV YETRVENKAN PPPPTTVDYI TRDTGNSSPR YMRCTINQIP CTVDLLSTSG 0401: MQLALIVQPM ALSHPSEEPI QVVDFGESGP VRCSRCKGYV NPFMKFIDQG RKFICNLCGY TDETPRDYQC NLGPDGRRRD ADERPELCRG TVDFVATKEY 0501: MVRDPMPAVY FFLIDVSMNA IQTGATAAAC SAIQQVLSDL PEGPRTFVGI ATFDSTIHFY NLKRALQQPL MLIVPDVQDV YTPLETDVIV QLSECRQHLE 0601: ILLESIPTMF QESKSPESAF GAAVKAAFLA MKSTGGKLMV FQSVLPSVGI GALSSREADG RANASAGEKE AHKLLQPADK TLRTMAIEFA EYQVCVDLFI 0701: TTQAYVDMAS ISEIPRTTGG QVYCYYPFSA LSDPPKLYND LRWNITRPQG FEAVMRVRCS QGIQVQEYSG NFCKRIPTDI DLPAIDCDKA IMVTLKHDDK 0801: LQDGAECGFQ CALLYTTISG ERRIRVLNLS IPCTNMLSNL FRSADLDSQF ACMLKQAANE IPSKALPLVK EQATNDCITI LHSYRKFCAT VTSTGQLILP 0901: EALKLLPLYT LALTKGVGLR MDGRIDDRSF WINHVSSLST PLAIPLVYPR MIAVHDLDAN DNEENVVPCP IPLQSEHLSD EGVYFLENGE DGLIYIGESV 1001: NSDILQKLFN VRSAAELPSQ YVLQKYDNQL SKKFNDVVNE IRRQRSSYLR IKLCKKGDPA GNMLFQSYMV EDRGSGGASY VDFLVSVHRQ IQHKLN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)