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AT3G44010.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.500
nucleus 0.500
ASURE: cytosol,nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Ribosomal protein S14p/S29e family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal protein S14p/S29e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, ribosome; EXPRESSED IN: male gametophyte, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Ribosomal protein S14 (InterPro:IPR001209); BEST Arabidopsis thaliana protein match is: Ribosomal protein S14p/S29e family protein (TAIR:AT4G33865.1); Has 986 Blast hits to 986 proteins in 355 species: Archae - 225; Bacteria - 0; Metazoa - 331; Fungi - 136; Plants - 156; Viruses - 0; Other Eukaryotes - 138 (source: NCBI BLink).
Protein Annotations
BioGrid:8835BioGrid:8838eggNOG:COG0199eggNOG:KOG3506
EMBL:AF324695EMBL:AF325031EMBL:AF326888EMBL:AF349528
EMBL:AF361851EMBL:AK118617EMBL:AK175132EMBL:AK175152
EMBL:AK175172EMBL:AK175173EMBL:AK175283EMBL:AK175731
EMBL:AK175739EMBL:AK175819EMBL:AK175918EMBL:AK176060
EMBL:AK176070EMBL:AK176294EMBL:AK176295EMBL:AK176322
EMBL:AK176332EMBL:AK176439EMBL:AK176861EMBL:AK228020
EMBL:AL031032EMBL:AL163975EMBL:AY086371EMBL:AY086767
EMBL:AY088245EMBL:AY129480EMBL:BT002766EMBL:BT004344
EMBL:BT028875EMBL:CP002686EMBL:CP002687EnsemblPlants:AT3G43980.1
EnsemblPlants:AT3G44010EnsemblPlants:AT3G44010.1EnsemblPlants:AT4G33865.1entrez:823515
entrez:823518entrez:829529GeneID:823515GeneID:823518
GeneID:829529Genevisible:Q680P8GO:GO:0003735GO:GO:0006412
GO:GO:0022627GO:GO:0046872Gramene:AT3G43980.1Gramene:AT3G44010.1
Gramene:AT4G33865.1hmmpanther:PTHR12010hmmpanther:PTHR12010:SF6HOGENOM:HOG000231300
InParanoid:Q680P8IntAct:Q680P8InterPro:IPR001209iPTMnet:Q680P8
KEGG:ath:AT3G43980KEGG:ath:AT3G44010KEGG:ath:AT4G33865KO:K02980
OMA:CFREKAAPaxDb:Q680P8Pfam:PF00253Pfam:Q680P8
PhylomeDB:Q680P8PIR:T48952PRIDE:Q680P8PRO:PR:Q680P8
ProteinModelPortal:Q680P8Proteomes:UP000006548Reactome:R-ATH-156827Reactome:R-ATH-1799339
Reactome:R-ATH-72689Reactome:R-ATH-72695Reactome:R-ATH-72702Reactome:R-ATH-72706
Reactome:R-ATH-975956Reactome:R-ATH-975957RefSeq:NP_189984.1RefSeq:NP_189987.1
RefSeq:NP_567938.1SMR:Q680P8STRING:3702.AT4G33865.1TAIR:AT3G43980
TAIR:AT3G44010TAIR:AT4G33865UniGene:At.20223UniGene:At.20445
UniGene:At.43007UniProt:Q680P8
Coordinates (TAIR10) chr3:-:15800175..15801132
Molecular Weight (calculated) 6429.83 Da
IEP (calculated) 10.54
GRAVY (calculated) -0.72
Length 56 amino acids
Sequence (TAIR10)
(BLAST)
1: MGHSNVWNSH PKKYGPGSRL CRVCGNSHGL IRKYGLNCCR QCFRSNAKEI GFIKYR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)