AT3G43930.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.967 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : BRCT domain-containing DNA repair protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
BRCT domain-containing DNA repair protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: BRCT (InterPro:IPR001357); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G26270.1); Has 308 Blast hits to 303 proteins in 95 species: Archae - 0; Bacteria - 0; Metazoa - 145; Fungi - 87; Plants - 56; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:15760948..15763263 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 56411.30 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 8.53 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.40 | ||||||||||||||||||||||||||||
| Length | 502 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEGVRRAEVI DTKRCSKLRV DFTPSLRGSR ISEPFSPATT TTTTSRFHPP VRSDGPFSGL IICVTGLSKE ARKQVKEATE RLGGEYSALL HSLCTHLVVQ 101: NYDGRKFEHA LKHGRRETLY IVTLGWFVDS VCRNVKLSES FYAVKNPEET KVNEDGLKSV YAVEKLHRGG GVQGIEVTGS KDLALSGYSV FIDADISEEV 201: RRQVSQVAVE GGAKLMTQWF IGCNASHVVC EGGSVLRYLG HSSNLVTPLW LQKTLEEKPT QNLVQMSDDL ARDLRTMIEN LGKESPTDRT RPHKERQKIV 301: ESAKKTVTNR HAKMGKTLIQ PLNLSSLLDS ISWTISEPTS TASVIIDSFS NNDDIERKSL SAFFDAKSND SFTHSMRLLT ESERMELVYK NHFITLLLPI 401: DWYGEMGPSS RSYFSETGFT CQQILQNIYA FYQENMSEEE LKAAIHTNSR HSEKLRAADS VMKGGKTVFK RIQFLGSEKG FEMLKRVSSF NCSNVYELII 501: KA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)