AT3G43890.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.994 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Cysteine/Histidine-rich C1 domain family protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT1G69150.1); Has 1543 Blast hits to 699 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 41; Fungi - 2; Plants - 1486; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:15741468..15743453 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 76535.90 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 6.82 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.41 | ||||||||||||||||||||||||||||
| Length | 661 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDDLKVNLPF HEHPLTPVKM ESKCDWCGIK FIHISDGYQC DSCFTPLFHK TCANDKNIAH PSQACGIILY HTVNFDSGKW RCAKCGEKIY DSLFFVCNDC 101: VLKPRRKGSR FGGSSYFHFN CAKYPPSEVI DVPQHHDHKL KLEMVISSFT CAACGKDGDG YSYKCQECNL TFHVNCEKYP AEVTHFSHFL HPLKLFKGEP 201: PAYTDGKCRL CGEKLANFEV FYHCSACNFS LDLQCVFHPP KQNPHDLNIH DHPLTLMPKS ISFTCTTCGL NGDRSPYVCL PCDFTSHNDC SGYPWVININ 301: RHDHRVSRTS LIGVVNSVCG ICRKKMDWSC GGYSCQKCSS YVFHTKCATR EDVWDGKEMK DEPEEEEAIQ PFTIIDENTI KHVSHKEHNL RLDKSGIFIE 401: ERICEACVYP IYHHSFYSCM SCSFILHESC AYLPLWKRHV VSNERHEYKY WDYFIRCSAC RLLSNGFRYE TTQTSLDLRC ASTTEPFFHK THPHPLFYTS 501: PQGICSICKK DHLHVLRCVE DGCEYIMDYK CALLPYEVKH SVDQHFLSLC YGEENASGKH WCDICEKEMD PKTWFYTSKD CELTLHTDCV LGDFRGLKPE 601: SEESMYIDDF EMYVKVVRNN SMSRPLCKQC KSRCIFPVIL ETWNESCLRN EYYCSEACFY S |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)