AT3G43300.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : HOPM interactor 7 | ||||||||||||
| Curator Summary (TAIR10) |
AtMIN7 is an immunity associated Arabidopsis protein targeted by HopM1, a conserved Pseudomonas syringae virulence protein. AtMIN7 encodes one of the eight members of the Arabidopsis adenosine diphosphate (ADP) ribosylation factor (ARF) guanine nucleotide exchange factor (GEF) protein family. The AFR GEF proteins are key components of the vesicle trafficking system in eukaryotic cells. HopM1 mediates the destruction of AtMIN7 via the host proteasome. | ||||||||||||
| Computational Description (TAIR10) |
HOPM interactor 7 (ATMIN7); FUNCTIONS IN: protein binding, guanyl-nucleotide exchange factor activity; INVOLVED IN: defense response to bacterium, vesicle-mediated transport, growth; LOCATED IN: trans-Golgi network, early endosome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SEC7-like (InterPro:IPR000904), Armadillo-type fold (InterPro:IPR016024), Protein of unknown function DUF1981, SEC7 associated (InterPro:IPR015403); BEST Arabidopsis thaliana protein match is: SEC7-like guanine nucleotide exchange family protein (TAIR:AT1G01960.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:15234235..15245034 | ||||||||||||
| Molecular Weight (calculated) | 195067.00 Da | ||||||||||||
| IEP (calculated) | 5.26 | ||||||||||||
| GRAVY (calculated) | -0.18 | ||||||||||||
| Length | 1758 amino acids | ||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MAAGGFLTRA FDTMLKESGG KKFPDLQKAI QAYQDGSKVV TQAAPSSIVE SSQAEGGGEK TGVEADEPQK VTSAEVAQQA SQSKSETINV SLANAGHTLG 0101: GAEVELVLKP LRLAFETKNL KIFDAALDCL HKLIAYDHLE GDPGLDGGKN SAPFTDILNM VCSCVDNSSP DSTVLQVLKV LLTAVASGKF KVHGEPLLGV 0201: IRVCYNIALN SKSPINQATS KAMLTQMISI VFRRMETDIV SASSTVSQEE HVSGDTSSPK NEEITAADEN EKEMTLGDAL TQAKDTTLAS VEELHTLVGG 0301: ADIKGLEAAL DKAVHLEDGK KIKRGIELES MSIGQRDALL VFRTLCKMGM KEDSDEVTTK TRILSLELLQ GMLEGVSHSF TKNFHFIDSV KAYLSYALLR 0401: ASVSQSSVIF QYASGIFSVL LLRFRDSLKV SMDCYLSPYF SDPKSHSQGE IGIFFPIIVL RSLDNSECPN DQKMGVLRML EKVCKDPQML VDVYVNYDCD 0501: LEAPNLFERM VTTLSKIAQG SQSADPNPAM ASQTASVKGS SLQCLVNVLK SLVDWEKIRR EAENSTRNAN EDSASTGEPI ETKSREDVPS NFEKAKAHKS 0601: TMEAAISEFN RNSVKGVEYL IANKLVERNP ASVAQFLRST SSLSKVMIGD YLGQHEEFPL AVMHAYVDSM KFSEMKFHSA IREFLKGFRL PGEAQKIDRI 0701: MEKFAERYCA DNPGLFKNAD TAYVLAYAVI MLNTDAHNPM VWPKMSKSDF TRMNATNDPE DCAPTELLEE IYDSIVQEEI KLKDDDTMKK LSSQRPGGEE 0801: RGGLVSILNL GLPKRISAAD AKSETEDIVR KTQEIFRKHG VKRGVFHTVE QVDIIRPMVE AVGWPLLAAF SVTMEVGDNK PRILLCMEGF KAGIHIAYVL 0901: GMDTMRYAFL TSLVRFTFLH APKEMRSKNV EALRILLGLC DSEPDTLQDT WNAVLECVSR LEFIISTPGI AATVMHGSNQ ISRDGVVQSL KELAGRPAEQ 1001: VFVNSVKLPS ESVVEFFTAL CGVSAEELKQ SPARVFSLQK LVEISYYNIA RIRMVWARIW SVLAEHFVSA GSHHDEKIAM YAIDSLRQLG MKYLERAELT 1101: NFTFQNDILK PFVIIMRNTQ SQTIRSLIVD CIVQMIKSKV GSIKSGWRSV FMIFTAAADD EVESIVEKSF ENVEQVILEH FDQVIGDCFM DCVNCLIRFA 1201: NNKASDRISL KAIALLRICE DRLAEGLIPG GVLKPVDGNE DETFDVTEHY WFPMLAGLSD LTSDYRPEVR NCALEVLFDL LNERGNKFST PFWESIFHRI 1301: LFPIFDHVSH AGKESLISSG DVKFRETSIH SLQLLCNLFN TFYKEVCFML PPLLSLLLDC AKKSDQTVVS ISLGALVHLI EVGGHQFSEG DWDMLLKSIR 1401: DASYTTQPLE LLNALSFDNP KKNLVLAGDI EADASDSPRV DRNPDDIKDN GKVSAQASPR IGTHGTSLES GIPPKADGSE GRPSSSGRAQ KDVDDVNLQR 1501: SQTFGQRFMD NLFLRNLTSQ PKSSVAEVTV PSSPYKHEDP TEPDSREEES PALGAIRGKC ITQLLLLGAI NSIQQKYWSN LKTPQKIAIM DILFSFIEFA 1601: SSYNSYSNLR TRMNHIPTER PPLNLLRQEL EGTTIYLDVL QKTTSGLADD ASNSEDRLEG AAEEKLVSFC EQVLKETSDL QSTLGETTNM DVHRVLELRS 1701: PVIVKVLEGM CFMNNTIFRK HMREFYPLLT RLVCCEQMEI RGALANLFKA QLKPLLQQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)