AT3G42960.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.951 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : TAPETUM 1 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Arabidopsis homolog of TASSELSEED2. Expressed specifically in tapetal cells. | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
TAPETUM 1 (ATA1); FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: flower development; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G26760.1); Has 115619 Blast hits to 115418 proteins in 3535 species: Archae - 928; Bacteria - 77402; Metazoa - 4592; Fungi - 5922; Plants - 2472; Viruses - 7; Other Eukaryotes - 24296 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:15018735..15019656 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 28348.20 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.95 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.17 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 272 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MANSDKRLFE KVAIITGGAR GIGAATARLF TENGAYVIVA DILENEGILV AESIGGCYVH CDVSKEADVE AAVELAMRRK GRLDVMFNNA GMSLNEGSIM 101: GMDVDMVNKL VSVNVNGVLH GIKHAAKAMI KGGRGGSIIC TSSSSGLMGG LGGHAYTLSK GAINGVVRTT ACELGSHGIR VNSISPHGVP TDILVNAYRK 201: FLNHDKLNVA EVTDIIAEKG SLLTGRAGTV EDVAQAALFL ASQESSGFIT GHNLVVDGGY TSATSTMRFI YN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)