AT3G42770.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.691 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : F-box/RNI-like/FBD-like domains-containing protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
F-box/RNI-like/FBD-like domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT3G44060.1); Has 1936 Blast hits to 1850 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 1932; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:14867122..14870083 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 60934.10 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.94 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.08 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 532 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNCLPDELLV QILSFLPTKE ATSTSLLSKR WRTLFTLSPN LDFDNSLLLQ SKKRKWNMRN IQKSFVGFVD STLALQGGKG IKSFSLKFKE TLGDVNGEVD 101: VNRWICNALE HGVSELHLRI DYTKRCHLPS EIFTSTKLVK LSLVTQSCFP VVPNCISLPS LKVLFLDSIW FEVPQFLIFL TACPALEDLT IYQKPHSVGM 201: PYHISSKTIK RLSVTYTCGY FVDYGLKLFN TPSVVDLYYS DYVRHKYPHM NLDSLPKATL DIHFLDDNAA NVTELLSGIR NVKTLHLTSS TVKVILLCCK 301: GEIPMFENLI NLKFSGKTRQ WKFLLPLLLE ICPNLTTLVL SGLDQNWFVG FRTPPNNQVK MLSIMQYQGS ERELKLISYF VLKMECLQVV KVYVSSPMND 401: LKKMQLTEDL LKLPKASPKL NIQVLVPSDT YLPALKVLFL DSVWFDFHQF ANVFFPACPA LEDFAIHIKS FRRKARSENE LEHISHFSLK MEFLEVLKVY 501: VALTMDDTKK VELTKELLKL PISSSKLIIQ VM |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)