AT3G42723.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.887 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : aminoacyl-tRNA ligases;ATP binding;nucleotide binding | ||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
aminoacyl-tRNA ligases;ATP binding;nucleotide binding; FUNCTIONS IN: nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding; INVOLVED IN: translation, tRNA aminoacylation for protein translation; LOCATED IN: cytoplasm; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class II (D/K/N)-like (InterPro:IPR018150), Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT3G29750.1); Has 134 Blast hits to 130 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 133; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:14838392..14841189 | ||||||||||||||||||||
| Molecular Weight (calculated) | 94142.00 Da | ||||||||||||||||||||
| IEP (calculated) | 6.32 | ||||||||||||||||||||
| GRAVY (calculated) | -0.65 | ||||||||||||||||||||
| Length | 818 amino acids | ||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MATQAAQAIT VTDLEAILDR FVEKLEEKLD SVVQRLQAQQ EEYRRGIREI FAKFFPKLLP ILGSQSFQRR CILAGEEEPM LHKLAGEDLF LLIRAIIRPR 101: SSWLDSTVPF PRLLVARQES HRRSFSGYYG SDSQESSDGV VSRRKSWERK RYRESKDGDI RSSEQSARNG SLFWTNSKKA WEQVGLDSQE KNDNAADSIR 201: VLYIGFQGTA PQVAMEVEHD IISRDAAWKG QKKQSQVAMV GRERLPPLVK DSHCEEEHRE ARVSRPLDEN LRRCLSNFEN YFGENNIPEQ ERLQIVYSNL 301: EGDIGQWIKH LWKKNSPTSW KEFKCMMARE TKTTMKVNHQ PHYSGIQQEG SVREYRERFE ALCLGSVILP GQGLEALFLQ GLQPSLQTAV RELKPNGIVQ 401: MMDTAQWLEE SNSLMVYGSG LSVQTEPKVY PTTQAELRSM VLMGYMREDL KDTPRPANED TGTLKQEHEL PGTEVATCRG MRFYGYILQQ EVSFSYRLAS 501: DVKRSCQEIS LRINDIDIVE DYCVWDLKRD VVDVILGYEW LSKLGETEVN WQNQSFSFIH NQDWVTLCPK NKDLEQGTKR VKMRSEKEQG GMRNELESDC 601: GIVAYYLADK VALKGESNVS CVEVTNDRDC EDEKRGENQE MKLSTEYPKE VSWFNEFEQI GILVKMQFTR PPEVFLGQVM EQENVKATIE VDVCVEKQKR 701: EIEDHLVLGL KTGEDKVRLM VGSFSKQQDR VYKCCMMLEM LLVSNGVSSL ENTRALKRSA EMSRWKQFGV THKEGKERGS SQTGFGGTID PRAKTKHETK 801: ANKAMINARE FHFQFLPP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)