AT3G32920.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:mitochondrion 0.965 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: DNA repair, SOS response, DNA recombination, DNA metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: DNA recombination/repair protein RecA/RadB, ATP-binding domain (InterPro:IPR020588), ATPase, AAA+ type, core (InterPro:IPR003593), DNA recombination and repair protein RecA (InterPro:IPR013765), DNA recombination/repair protein RecA, monomer-monomer interface (InterPro:IPR020587); BEST Arabidopsis thaliana protein match is: recA DNA recombination family protein (TAIR:AT2G19490.1); Has 17255 Blast hits to 17200 proteins in 5414 species: Archae - 42; Bacteria - 14123; Metazoa - 1; Fungi - 5; Plants - 108; Viruses - 52; Other Eukaryotes - 2924 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr3:-:13485399..13486713 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 24287.90 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 8.95 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | 0.16 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 226 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MYLSRAVSPR NVPVFSTGSF ALDVALGVGG LPKGRLVEIY GPEASGKTAL ALHMLSMLLI RSLAKAIGVN TENLLLSQPD CGKQALSLVD TLIQSGSVDV 101: IVVDSVAALV PKGELDGEMG DAHMAIQARL MSQALRKFSH SLLLSQTLLI FINQVRERFG GPTEVTSGGN ALKFYAPMRL DIKRIGLIKK GEEFFRMTKC 201: LCLNACAHNG KSSLREDSEE QARSAI |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)