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AT3G32920.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 0.965
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: DNA repair, SOS response, DNA recombination, DNA metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: DNA recombination/repair protein RecA/RadB, ATP-binding domain (InterPro:IPR020588), ATPase, AAA+ type, core (InterPro:IPR003593), DNA recombination and repair protein RecA (InterPro:IPR013765), DNA recombination/repair protein RecA, monomer-monomer interface (InterPro:IPR020587); BEST Arabidopsis thaliana protein match is: recA DNA recombination family protein (TAIR:AT2G19490.1); Has 17255 Blast hits to 17200 proteins in 5414 species: Archae - 42; Bacteria - 14123; Metazoa - 1; Fungi - 5; Plants - 108; Viruses - 52; Other Eukaryotes - 2924 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0468eggNOG:KOG1433EMBL:AP002067EMBL:CP002686
EnsemblPlants:AT3G32920EnsemblPlants:AT3G32920.1entrez:823055ExpressionAtlas:Q3EAS6
Gene3D:3.40.50.300GeneID:823055Genevisible:Q3EAS6GO:GO:0003697
GO:GO:0005524GO:GO:0005737GO:GO:0006281GO:GO:0006310
GO:GO:0008094hmmpanther:PTHR22942hmmpanther:PTHR22942:SF1HOGENOM:HOG000034536
InterPro:IPR003593InterPro:IPR013765InterPro:IPR020587InterPro:IPR020588
InterPro:IPR027417OMA:WIDADRTPANTHER:PTHR22942:SF1PaxDb:Q3EAS6
Pfam:PF00154Pfam:Q3EAS6Pfscan:PS50162Pfscan:PS50163
PRINTS:PR00142PRO:PR:Q3EAS6PROSITE:PS50162PROSITE:PS50163
ProteinModelPortal:Q3EAS6Proteomes:UP000006548RefSeq:NP_189781.4SMART:SM00382
SMR:Q3EAS6STRING:3702.AT3G32920.1SUPFAM:SSF52540TAIR:AT3G32920
UniGene:At.53642UniProt:Q3EAS6
Coordinates (TAIR10) chr3:-:13485399..13486713
Molecular Weight (calculated) 24287.90 Da
IEP (calculated) 8.95
GRAVY (calculated) 0.16
Length 226 amino acids
Sequence (TAIR10)
(BLAST)
001: MYLSRAVSPR NVPVFSTGSF ALDVALGVGG LPKGRLVEIY GPEASGKTAL ALHMLSMLLI RSLAKAIGVN TENLLLSQPD CGKQALSLVD TLIQSGSVDV
101: IVVDSVAALV PKGELDGEMG DAHMAIQARL MSQALRKFSH SLLLSQTLLI FINQVRERFG GPTEVTSGGN ALKFYAPMRL DIKRIGLIKK GEEFFRMTKC
201: LCLNACAHNG KSSLREDSEE QARSAI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)