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AT3G32090.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.533
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : WRKY family transcription factor
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
WRKY family transcription factor; FUNCTIONS IN: sequence-specific DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY DNA-binding protein 40 (TAIR:AT1G80840.1); Has 208 Blast hits to 208 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 208; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
EMBL:CP002686EnsemblPlants:AT3G32090EnsemblPlants:AT3G32090.1entrez:822964
Gene3D:2.20.25.80GeneID:822964GO:GO:0003700GO:GO:0043565
Gramene:AT3G32090.1hmmpanther:PTHR31429InterPro:IPR003657KEGG:ath:AT3G32090
PaxDb:F4JA74Pfam:PF03106Pfscan:PS50811PRIDE:F4JA74
PROSITE:PS50811ProteinModelPortal:F4JA74Proteomes:UP000006548RefSeq:NP_189752.1
SMR:F4JA74SUPFAM:0050605SUPFAM:SSF118290TAIR:AT3G32090
UniGene:At.53628UniProt:F4JA74
Coordinates (TAIR10) chr3:+:13078956..13079921
Molecular Weight (calculated) 20613.20 Da
IEP (calculated) 9.06
GRAVY (calculated) -0.31
Length 182 amino acids
Sequence (TAIR10)
(BLAST)
001: MKRLCCWVEL RLQVMKKLKL KIEGCSFDDM YFVLQIRNHG EIITCTSRGD ILSRKRKTLT TSLIPLLVIT VCALRCIEVV EKVKVHPLWQ ATPMVQRSVE
101: DQSVLVATYE GEHNHPMPSQ MDSNNGLNRY ISHGGSASTP VAANKRSSLT EPTDRPLIVY SMKKRREARA TEMADEEHVS GS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)