AT3G31900.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.639 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ATP-dependent helicase family protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
ATP-dependent helicase family protein; FUNCTIONS IN: DNA binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: ATP-dependent helicase family protein (TAIR:AT3G32280.1); Has 189 Blast hits to 187 proteins in 58 species: Archae - 0; Bacteria - 0; Metazoa - 20; Fungi - 46; Plants - 121; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:12875071..12877422 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 44272.30 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 8.28 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.27 | ||||||||||||||||||||||||||||
| Length | 393 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDAKRKFSQE KDLYQNDDKR KKVVALENQE TGGSCVDGNV AHWFSKTKFN GLVDVPIVYL ALEENVVKND LTLRSSLKHV IIGSISGGSN SGKGLAKDLY 101: LDVNELVEVQ VRSDKEINMM KDKGKAIFDL NEAIWPKDEP ISNTFEKSRA TLTNCEHSWI WKQGFGDMCY HLQGSSVATG FRSNICKDIK MRVPKDSFSG 201: TGIFPHPLHK MIMKPHHFEI LNFLCKNLVV ENSNGCIIDQ TPLSEKTFLM ISFIYVGVER LEKKFGELKV NDLVLLDFYS TKASAKQFSN IVSDNSGAEA 301: SDSCRDILLN ILSVVVFGRG TDPRNEMMSF LKVVSRIKTP HKVLLTGSLY QNNIKEVFNI LDVAFPEFLK HNQIGKNFRK FLNVEADGPS TNL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)