AT3G30842.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : pleiotropic drug resistance 10 | ||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
pleiotropic drug resistance 10 (PDR10); FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: drug transmembrane transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC-2 type transporter (InterPro:IPR013525); BEST Arabidopsis thaliana protein match is: pleiotropic drug resistance 12 (TAIR:AT1G15520.1); Has 363000 Blast hits to 261526 proteins in 3923 species: Archae - 7344; Bacteria - 290817; Metazoa - 9149; Fungi - 7312; Plants - 5618; Viruses - 4; Other Eukaryotes - 42756 (source: NCBI BLink). | ||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:12593959..12600432 | ||||||||||||
| Molecular Weight (calculated) | 160136.00 Da | ||||||||||||
| IEP (calculated) | 9.10 | ||||||||||||
| GRAVY (calculated) | -0.07 | ||||||||||||
| Length | 1406 amino acids | ||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MAHYRVSSEV ENIMNRDRSH RKNEEEDEEE ALKLAAMEKL QRLPTYDRAR KAVLKGITGG FKEIDMKDLG LAERRELFDR VMTMDDEDWH GEYLRRLKSR 0101: FDRVSLHLPT IEVRFEDLNV TAEAYAGSKT VPTVLNSYVN LLKGIGTKIR VLPDRKKRIS ILNDVSGIIK PGRLTLLLGP PGSGKSTLLK ALSGKTETGL 0201: RSTGKVTYNG HELHEFVPER TAGYIDQYDV HLPDLTVRET LKFSAKCQGV GTGYDMLAEL LRREKDLNIK PDPYLDALMK ASVIKGHKEY VVTDYVLKVL 0301: GLEICADTIV GNHMKRGISG GQKKRVTTGE MLVGPVGAFF MDNISDGLDS STTFQIVKSI KQMIHVFDKT ALISLLQPPP ETFELFDDVI ILGEGHIVYQ 0401: GPREDVLEFF EFMGFKCPER KGIADYLQEI LSKKDQEQYW ANPELPYRYV TAKKFEEGFK IHHFGRAMRS QLATPFDRLK NHRAALTRTT YGASKLELLK 0501: ACLERESILM KRNLRTFVLK SLQLIINAIL IGVVFWQQKN YPSTVEDGII YMGAIYLEVQ MIVFSGFFEL PMTIDKLPVF YKQRHFSFYP SWAFSLPTSI 0601: ITFPLSFVEV FIVVLITYFT IGYDLTVPSF LKHYLVLALC GQMSYGLFRC IAAVTRNHVV SNTMGCLAVM WLMTFSGYVL SRNQVHKWLT WAYWTSPMMY 0701: IQTAVSVNEF RSESWKDVIS KKPFFKFSTS HFKDIKLNRV VYDFQGLGVA VLKSREYGIS KTAVLPDERE EADSNNTTGR DYTGTTMERF FDRVVTTRTC 0801: NDKKLRIPFK PLYMTFENIT YSVDTPKEMK EKGIRENKLV LLNGLSGAFR PGVLTALMGV SGAGKTTLMD VLAGRKNTGY IQGEIYVSGF PKKQDSFARV 0901: SGYCEQSDIH SPLLTVYESL LYSAWLRLPP DIDTHTREVM ELIELKALRE MLVGYVGISG LSTEQRKRMT IAVELVANPS ILFMDEPTSG LDARAAAIVM 1001: RTVRNTVDTG RTVVCTIHQP SIDIFESFDE LFLLTRGGEE IYVGPIGHHS SQLIEYFEGI RGVGKIKEGY NPATWALEVT TRAQEDVLGV TFAQVYKKSN 1101: LYRRNKDLIK ELNNIPPHAQ DIHFSTKYSQ SYLSQFQACL WKQHKSYWRN VPYNAVRFSF GAAVGIMYGI IFWSLGKRKG TRQDIFNSVG AMSTVVGFLS 1201: SQSAATVRPV VIAERTVFYR EAGAGMYSAL PYAFSQVIIE IPYTMAQACI YGVIVYGMIG YEWTASKFFL NIFFTFISIL YSIYTGIMVI SVSPNQEIAS 1301: ILNGVISTSW NVFSGFTIPR PRMHVWLRWF TYVCPGWWGL YGLTIAQYGD VETRLDTGET VVEFMKNYYG YEYNFLWVVS LTLIAFSMFF VFIYAFSVKI 1401: LNFQKR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)