AT3G30530.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : basic leucine-zipper 42 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
basic leucine-zipper 42 (bZIP42); FUNCTIONS IN: DNA binding, protein homodimerization activity, protein heterodimerization activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: inflorescence meristem, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: basic leucine-zipper 43 (TAIR:AT5G38800.1); Has 1669 Blast hits to 1669 proteins in 135 species: Archae - 0; Bacteria - 2; Metazoa - 133; Fungi - 19; Plants - 1463; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:+:12139512..12140033 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 20302.70 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.65 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.95 | ||||||||||||||||||||||||||||||||||||||||
| Length | 173 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MQPQTDVFSL HNYLNSSILQ SPYPSNFPIS TPFPTNGQNP YLLYGFQSPT NNPQSMSLSS NNSTSDEAEE QQTNNNIINE RKQRRMISNR ESARRSRMRK 101: QRHLDELWSQ VMWLRIENHQ LLDKLNNLSE SHDKVLQENA QLKEETFELK QVISDMQIQS PFSCFRDDII PIE |
||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)