AT3G30370.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.950 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
CONTAINS InterPro DOMAIN/s: Transposase, MuDR, plant (InterPro:IPR004332); BEST Arabidopsis thaliana protein match is: SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (TAIR:AT1G18050.1); Has 35 Blast hits to 35 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:11965180..11965719 | ||||||||||||||||||||
| Molecular Weight (calculated) | 20892.30 Da | ||||||||||||||||||||
| IEP (calculated) | 4.42 | ||||||||||||||||||||
| GRAVY (calculated) | -0.77 | ||||||||||||||||||||
| Length | 179 amino acids | ||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAMMMHDPTN VGDVDPEAED RDEFHMEEML NEWTDEPQIH HDVYPESDRE ENDEDEARFQ THLQRGDGHL YEKQTFFSGV AFKEAVVDYA LRTGCNLKQY 101: RYDSDKIGFK CVGCDGKEDG VKCFWQVYAA ILPSDSMWRI RKFINKHSCI PNGECEMFEM INKHSCIPQS NTTLFINDS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)