AT3G30280.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.890 What is SUBAcon? |
|
||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : HXXXD-type acyl-transferase family protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
HXXXD-type acyl-transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: HXXXD-type acyl-transferase family protein (TAIR:AT4G15390.1); Has 2342 Blast hits to 2327 proteins in 132 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 49; Plants - 2289; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:+:11914366..11915697 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 48702.50 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 4.70 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.01 | ||||||||||||||||||||||||||||
| Length | 443 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: METMKVETIA KEIIKPSSTT PNDLQTLQLS IYDHILPPVY TVAFLFYTKD DLISPEQSSH KLKTSLAETL TKFYPLAGRI KGVTIDCNDE GAVFVDARVN 101: NYPLSDFLRS PDFKTLQQLL PLDVIDDPYE AATTWPLLLV KATYFPCGGM AIGLCITHKI ADATSISTFI QSWAAMARGE AGDIVADPVF AAANFYPPAN 201: ELFKFPVDEN ANKISQITKR FVFSASKLEE LRTKAASEDF VGRPKRVESV TALLWKAFVA AASSNTNACD MKVLIQPSNL RPKIPSLLAE SLIGNIMFSS 301: VVLGISQQEE IKIEKAVRDL RKQGDDLQNV IKEEGGSSSA MIGSKLANLM LTNYSKLSYE THEPYTVSSW CKLPLYEASF GWGSPVWIAG NVAPMLENVT 401: MLIDSKDGQG IEAFVTLPEE NMLSLEQNTE LLAFASVNPS VLV |
||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)