AT3G29765.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.788 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : General transcription factor 2-related zinc finger protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
General transcription factor 2-related zinc finger protein; BEST Arabidopsis thaliana protein match is: TTF-type zinc finger protein with HAT dimerisation domain (TAIR:AT1G19260.1); Has 937 Blast hits to 895 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 559; Fungi - 1; Plants - 375; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:11595467..11597077 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 61795.70 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.87 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.20 | ||||||||||||||||||||||||||||||||
| Length | 536 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTSPPIQKDI VHCFSEEVTR SIIEEMDNDV FGLLVDESAD ASDKEQMAVV FRFVDKYGVV KERFIGVIHV QETSSLSLKS AIDSLFAKYG LSLKKLRGKG 101: YDGASNMKGK FNGLRSLILK ENSSAYYVHC FAHQLQLVVM AVAKKHVEVG EFFYMISVLL NVVGASCKRK DKIREIDRQK VEEKISNGEI KTGTGLNQEL 201: SLQRPGNTRW GSHYKTLLRL EELFSSIVIV LEYIQDEGTD TTKRQQAYGI LKYFHTFDFV FYLELMLLVM GLTDSLSKAL QRKDQDILNA ISLVKTTKCQ 301: LQKVRDDGWD AFMAEVSSFS EKTNTGMLKM EEEFVDSRRP RKKTGITNLH HYKVDCFYTV LDMQLQEFND CFDELNSELL ICMSSLSPID SFRQFDKSML 401: VRLTEFYPDD FSFVERRSLD HQLEIYLDNV KNDERFTDLE HLGDLARVMV ETRKHLSHPL VYRLLKLSLI LPVATATVVR CFSAMNFVKT TLRNRFGDVF 501: LSDCLVCFIE KQVLNTVTNE SVIKRFQDMS ERRVHL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)