AT3G29763.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : General transcription factor 2-related zinc finger protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
General transcription factor 2-related zinc finger protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: TTF-type zinc finger protein with HAT dimerisation domain (TAIR:AT1G19260.1); Has 931 Blast hits to 894 proteins in 51 species: Archae - 0; Bacteria - 0; Metazoa - 569; Fungi - 1; Plants - 358; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:11593924..11595441 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 57953.00 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 8.44 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.25 | ||||||||||||||||||||||||||||
| Length | 505 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MFIVKFIVSF NFFLTPVSHC SGSATALHKQ TNVVKNDYRI RLNASIDVSR HLLHQGLPFR GHDESEESTN KGNFLELLKY IAGQNEVVKK VVLKNAPKNN 101: QMTSPPIQKD IVHCFSEEVT RSIIEEMDND VFGLLVDESA DASDKEQMAV VFRFVDKYGV VKERFIGVIH VQETSSLSLK SAIDSLFAKY GLSLKKLRGK 201: GYDGASNMKG KFNGLRSLIL KENSSAYYVH CFAHQLQLVV MAVAKKHVEV GEFFYMISVL LNVVGAFCKR KDKIREIDRQ KVEEKISNGE IKTGTRLNQE 301: LSLQRPGNTR WGSHYKTLLR LEELFSSIVI VLEYIQDEGT DTTKRQQAYG ILKYFHTFDF VFYLELMLLV MGLSDSLSKA WQRKDQDILN AISLVKTTKC 401: QLQKVRDDGW DAFMAEVSSF SEKTNIGMLK MEEEFVDSRR PRKKTGITNL HHYKVDCFYT VLDMQLQEFN DRFDELNSEL LICMSSLSPI DSFRQFDKSM 501: LVRLT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)