AT3G29630.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.403 endoplasmic reticulum 0.394 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : UDP-Glycosyltransferase superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
UDP-Glycosyltransferase superfamily protein; FUNCTIONS IN: transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: inflorescence meristem, hypocotyl, root, flower, guard cell; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-Glycosyltransferase superfamily protein (TAIR:AT1G50580.1); Has 4885 Blast hits to 4851 proteins in 262 species: Archae - 0; Bacteria - 150; Metazoa - 84; Fungi - 12; Plants - 4629; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:-:11447178..11448524 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 50506.10 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.83 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.09 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 448 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGSKFHAFLY PWFGFGHMIP YLHLANKLAE KGHRVTFLAP KKAQKQLEPL NLFPNSIHFE NVTLPHVDGL PVGAETTADL PNSSKRVLAD AMDLLREQIE 101: VKIRSLKPDL IFFDFVDWIP QMAKELGIKS VSYQIISAAF IAMFFAPRAE LGSPPPGFPS SKVALRGHDA NIYSLFANTR KFLFDRVTTG LKNCDVIAIR 201: TCAEIEGNLC DFIERQCQRK VLLTGPMFLD PQGKSGKPLE DRWNNWLNGF EPSSVVYCAF GTHFFFEIDQ FQELCLGMEL TGLPFLVAVM PPRGSSTIQE 301: ALPEGFEERI KGRGIVWGGW VEQPLILSHP SIGCFVNHCG FGSMWESLVS DCQIVFIPQL VDQVLTTRLL TEELEVSVKV KRDEITGWFS KESLRDTVKS 401: VMDKNSEIGN LVRRNHKKLK ETLVSPGLLS SYADKFVDEL ENHIHSKN |
||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)