AT3G29580.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Arabidopsis phospholipase-like protein (PEARLI 4) with TRAF-like domain | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Arabidopsis phospholipase-like protein (PEARLI 4) with TRAF-like domain; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083), Phospholipase-like, arabidopsis (InterPro:IPR007942); BEST Arabidopsis thaliana protein match is: TRAF-like family protein (TAIR:AT3G58250.1); Has 479 Blast hits to 434 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 475; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:11394675..11395871 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 35042.40 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.56 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.24 | ||||||||||||||||||||||||||||||||||||
| Length | 306 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGNLDDNKFT WVIKNVPTLN SDMLFSNYFV IGGCSWRVVA HSKENNFKES LSLTLIVAED SAQKMGCGWS RYAKIIFTLV NQISEILSQR IETMFDQKSS 101: VFSSETMFSI GKFDEHFAGF IVNGEIKIVV EFLEIIDKLV LSKESNPPFK KTKLNNDGEV SKDLIREVPV IMESIVVNGF HVLPSQVEFV KRIFEKHPDV 201: AKEFRPTNRI VKTAYMNVLL SLIETLRQSP REISKNDLDG ACGLLRSMKE AGFKLDWLEK KLNEVLEKKE KEESYETRMR EIEEEMKDLK AKALDVGAPL 301: RLDDVV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)