AT3G29255.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.803 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : catalytics;intramolecular transferases | ||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
catalytics;intramolecular transferases; FUNCTIONS IN: catalytic activity, intramolecular transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Terpene synthase, conserved site (InterPro:IPR002365), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Squalene cyclase (InterPro:IPR018333), Prenyltransferase/squalene oxidase (InterPro:IPR001330); BEST Arabidopsis thaliana protein match is: putative pentacyclic triterpene synthase 3 (TAIR:AT5G36150.1); Has 1945 Blast hits to 1895 proteins in 560 species: Archae - 4; Bacteria - 822; Metazoa - 89; Fungi - 228; Plants - 608; Viruses - 0; Other Eukaryotes - 194 (source: NCBI BLink). | ||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:11209586..11213909 | ||||||||||||
| Molecular Weight (calculated) | 81374.70 Da | ||||||||||||
| IEP (calculated) | 7.45 | ||||||||||||
| GRAVY (calculated) | -0.28 | ||||||||||||
| Length | 706 amino acids | ||||||||||||
| Sequence (TAIR10) (BLAST) |
001: IDNKKWKLRI GAKAGDDPHL CTTNNYLGRQ IWEFDTNACS PEELFEVEKA RRNFSDNRSQ YKASADLLWL SKGEKVQTKH SAALQSDDGH WPAENSGCMF 101: FNAPFNDDGG WGLDVESHSS MFCTVLNYIC LRIMEVDPDH DRKKSACARA RKWIIDRGGA TYTPLFGKAC LSVLGVYEWS GCKPIPPEFW LFPSYFPING 201: GTVWIYFRDT FMALSYLYGK KFVATPTPLI LQLRQELYPQ TYADIVWSQA RNRCAKEDLY YPQTFVQDLF WKSVHMFSEN ILNRWPFKKL IRERAIRRAL 301: ELIHYHDEAT QYITGGGVPK VFHMLACWAE GPESGYFKKH LARVSGFIWI SEDGLKIQSF GSQIWDTVLL LKVMLAADID DEIRSMLIKG YSFLRKSQLI 401: ENPPGYYIKM FRDISKGGWG FSDKDQGWPA SDCTSESLEC CLIFESMPSN FIDEKMDVER LYDAVNMLLY LQSENGGKAV WERASGKKWL EWLSPIEFME 501: ETILEHEYVE CTGSAVVVLT RFMKQFPRHR TKEIETFIAK AVKYIESLQM ADGSWYGNWG VCFIYATFFA VRGLVAAGKT YQSYEPIRRA VQFLLKIQND 601: EGGWGESFLS CPGKKYISLE GNKTNVVNTG QAMMVLIMSG QMERDPLPVH RAAKVLINSQ MENGDFPQQE LRGVYKMNVL LHYPTYRNIF SLWALTYYTK 701: ALRLLL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)