AT3G29185.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Domain of unknown function (DUF3598) | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF3598 (InterPro:IPR022017); Has 83 Blast hits to 82 proteins in 37 species: Archae - 0; Bacteria - 52; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:11155092..11157207 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 44678.80 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 5.03 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.48 | ||||||||||||||||||||||||||||
| Length | 396 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAAATSFTCS LPFTPLSKSL KPIRSPILRS DYGTSRSFVI RSMTVQEDDK RTSDESMSID NLRGFVDLNV GKWTGSFHQF DGNGNLLHKI DTRLSASSYG 101: EDELLSLNQS LYIKQPTSAT SVSEEEEEEP EWVEYKIKET NMFTVDKYQQ IGFFPKERAF SLRYQTAGML DTTLRQGVLG EDDTGEESPR NLKLPSRRPS 201: LVCENCLYSK EIDRRARAFH IMDPKGVLEM LIVFLEERGL ENLAHPVLDN AQNDAERINP FLGTWKGRSV TKRSGVYGAT LSEADTVAVL EMNDKGQVVQ 301: DISSTSDEKK VTTNVHWEGK MSKDLVTFAE GYQMTLLPGG MYMGCPCDVS KCVADLKSFH LEFCWLESPS SRQRLIRTYD HEGLAVSSTY FTETKM |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)