AT3G29020.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : myb domain protein 110 | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a putative transcription factor (MYB110). | ||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
myb domain protein 110 (MYB110); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 105 (TAIR:AT1G69560.1); Has 8245 Blast hits to 7670 proteins in 553 species: Archae - 0; Bacteria - 0; Metazoa - 732; Fungi - 497; Plants - 5174; Viruses - 3; Other Eukaryotes - 1839 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:11008233..11009419 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 35290.50 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.98 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.83 | ||||||||||||||||||||||||||||||||||||
| Length | 305 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKMDFSCFQE YPFEFHCRGT TFNGFRENNA VSETVEEFCN KRRMQKKSDD LKTKKKKKQS VSRVCSRGHW RISEDTQLME LVSVYGPQNW NHIAESMQGR 101: TGKSCRLRWF NQLDPRINKR AFSDEEEERL LAAHRAFGNK WAMIAKLFNG RTDNALKNHW HVLMARKMRQ QSSSYVQRFN GSAHESNTDH KIFNLSPGNV 201: DDDEDVNLKK CSWEMLKEGT TNLKAQYLQE EYSSSRMPMQ GPHHHYSTFP ADSLALTLHV SIQEPSSSSS LSLPSSSTTG EHTMVTRYFE TIKPPAFIDF 301: LGVGH |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)