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AT3G28700.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF185)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF185); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF185 (InterPro:IPR003788); Has 3455 Blast hits to 3441 proteins in 877 species: Archae - 0; Bacteria - 1411; Metazoa - 158; Fungi - 104; Plants - 44; Viruses - 0; Other Eukaryotes - 1738 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1565eggNOG:KOG2901EMBL:BT025322EMBL:CP002686
EnsemblPlants:AT3G28700EnsemblPlants:AT3G28700.1entrez:822500ExpressionAtlas:Q1JPN1
GeneID:822500GO:GO:0008270Gramene:AT3G28700.1hmmpanther:PTHR12049
hmmpanther:PTHR12049:SF7HOGENOM:HOG000265463InterPro:IPR003788InterPro:IPR029063
ncoils:CoilOMA:YYVYRDMPANTHER:PTHR12049Pfam:PF02636
PhylomeDB:Q1JPN1Proteomes:UP000006548Reactome:R-ATH-6799198RefSeq:NP_189511.2
SMR:Q1JPN1STRING:3702.AT3G28700.1SUPFAM:SSF53335TAIR:AT3G28700
UniGene:At.42749UniProt:Q1JPN1
Coordinates (TAIR10) chr3:+:10759580..10761834
Molecular Weight (calculated) 51982.80 Da
IEP (calculated) 5.72
GRAVY (calculated) -0.32
Length 471 amino acids
Sequence (TAIR10)
(BLAST)
001: MLRKLLTQTS SRRLLFSGVP PLFSKSTISP FSSLSSSPEP PSSESPAVEH PGTTISIDRS SLYTPPDHSH ESTPDSELVK HLKSIIKFRG GPISVAEYME
101: EVLTNPKAGF YMNRDVFGAQ GDFITSPEVS QMFGEMIGVW TVCLWEQMGR PERVNLVELG PGRGTLMADL LRGTSKFKNF TESLHIHLVE CSPALQKLQH
201: QNLKCTDESS SEKKAVSSLA GTPVHWHATL QEVPSGVPTL IIAHEFYDAL PVHQFQKSTR GWCEKMVDVG EDSKFRFVLS PQPTPAALYL MKRCTWATPE
301: EREKMEHVEI SPKSMDLTQE MAKRIGSDGG GALIIDYGMN AIISDSLQAI RKHKFVNILD DPGSADLSAY VDFPSIKHSA EEASENVSVH GPMTQSQFLG
401: SLGINFRVDA LLQNCNDEQA ESLRAGYWQL VGDGEAPFWE GPNEQTPIGM GTRYLAMSIV NKNQGIPAPF Q
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)