AT3G28660.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G28640.1); Has 30916 Blast hits to 12747 proteins in 210 species: Archae - 0; Bacteria - 2; Metazoa - 48; Fungi - 39; Plants - 30416; Viruses - 0; Other Eukaryotes - 411 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:-:10739400..10740914 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 56648.90 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.91 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.08 | ||||||||||||||||||||||||||||||||||||||||
| Length | 504 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSVVSSFHQS WKSLILASQR CNTVKQIKST HSLFIIHGLH RNTYAISKLL TAFLHLPNLN KHFHYASSIF DSIEIPNSFV YDTMIRICSR SSQPHLGLRY 101: FLLMVKEEEE DITPSYLTFH FLIVACLKAC FFSVGKQIHC WVVKNGVFLS DGHVQTGVLR IYVEDKLLFD ARKVFDEIPQ PDVVKWDVLM NGYVRCGLGS 201: EGLEVFKEML VRGIEPDEFS VTTALTACAQ VGALAQGKWI HEFVKKKRWI ESDVFVGTAL VDMYAKCGCI ETAVEVFEKL TRRNVFSWAA LIGGYAAYGY 301: AKKATTCLDR IEREDGIKPD SVVLLGVLAA CAHGGFLEEG RTMLENMEAR YGITPKHEHY SCIVDLMCRA GRLDDALDLI EKMPMKPLAS VWGALLNGCR 401: THKNVELGEL AVQNLLDLEK GNVEEEEAAL VQLSNIYFSV QRNPEAFKVR GMIEQRGIRK TPGWSLLEVD GIVTKFVSGD VSHPNLLQIH TLIHLLSVDA 501: SQIL |
||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)