AT3G28415.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ABC transporter family protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
ABC transporter family protein; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: transport, transmembrane transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter, transmembrane domain (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: P-glycoprotein 18 (TAIR:AT3G28390.1); Has 825405 Blast hits to 389983 proteins in 4165 species: Archae - 14366; Bacteria - 646811; Metazoa - 17405; Fungi - 11742; Plants - 9388; Viruses - 36; Other Eukaryotes - 125657 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:10647123..10651540 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 133951.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.70 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.16 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1221 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MKSFGSVRSI FMHANSVDLV LMGLGLIGAV GDGFITPIIF FITGLLLNDI GDSSFGDKTF MHAIMKNAVA LLYVAGASLV ICFVGERQAS RMREKYLRAV 0101: LRQDVGYFDL HVTSTSDVIT SVSSDTLVIQ DVLSEKLPNF LMSASAFVAS YIVGFIMLWR LTIVGFPFFI LLLIPGLMCG RALINISRKI REEYNEAGSI 0201: AEQAISLVRT VYAFGSERKM ISKFSAALEG SVKLGLRQGI AKGIAIGSNG VTYAIWGFMT WYGSRMVMYH GAKGGTIFAV IICITYGGTS LGRGLSNLKY 0301: FSEAVVAGER IIEVIKRVPD IDSDNPRGQV LENIKGEVQF KHVKFMYSSR PETPIFDDLC LRIPSGKSVA LVGGSGSGKS TVISLLQRFY DPIVGEILID 0401: GVSIKKLQVK WLRSQMGLVS QEPALFATSI EENILFGKED ASFDEVVEAA KSSNAHDFIS QFPLGYKTQV GERGVQMSGG QKQRISIARA IIKSPTLLLL 0501: DEATSALDSE SERVVQEALD NATIGRTTIV IAHRLSTIRN VDVICVFKNG QIVETGSHEE LMENVDGQYT SLVRLQIMEN EESNDNVSVS MREGQFSNFN 0601: KDVKYSSRLS IQSRSSLFAT SSIDTNLAGS IPKDKKPSFK RLMAMNKPEW KHALYGCLSA VLYGALHPIY AYASGSMVSV YFLTSHDEMK EKTRIYVLLF 0701: VGLAVLCFLI SIIQQYSFAY MGEYLTKRIR ENILSKLLTF EVSWFDEDEN SSGSICSRLA KDANVVRSLV GERVSLLVQT ISAVSVACTL GLAISWKLSI 0801: VMIAIQPVVV GCFYTQRIVL KSISKKAIKA QDESSKLAAE AVSNIRTITA FSSQERILKL LKMVQEGPQR ENIRQSWLAG IVLATSRSLM TCTSALNYWY 0901: GARLIIDGKI TSKAFFELFI LFVSTGRVIA DAGAMTMDLA KGSDAVGSVF AVLDRYTNIE PEKPDGFVPQ NIKGQIKFVN VDFAYPTRPD VIIFKNFSID 1001: IDEGKSTAIV GPSGSGKSTI IGLIERFYDP LKGIVKIDGR DIRSYHLRSL RQHIGLVSQE PILFAGTIRE NIMYGGASDK IDESEIIEAA KAANAHDFIV 1101: TLSDGYDTYC GDRGVQLSGG QKQRIAIARA VLKNPSVLLL DEATSALDNQ SERMVQDALG RLMVGRTSVV IAHRLSTIQN CDTITVLDKG KVVECGTHSS 1201: LLAKGPTGVY FSLVSLQRTR Y |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)