AT3G28380.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : P-glycoprotein 17 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
P-glycoprotein 17 (PGP17); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: transport, transmembrane transport; LOCATED IN: plasma membrane; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: P-glycoprotein 18 (TAIR:AT3G28390.1); Has 843041 Blast hits to 392204 proteins in 4166 species: Archae - 14548; Bacteria - 659973; Metazoa - 17582; Fungi - 11884; Plants - 9780; Viruses - 43; Other Eukaryotes - 129231 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:10623742..10628201 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 136070.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.51 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.14 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1240 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MGKEDEKESG RDKMKSFGSI RSIFMHADGV DWILMALGLI GAVGDGFITP VVVFIFNTLL NNLGTSSSNN KTFMQTISKN VVALLYVACG SWVICFLEGY 0101: CWTRTGERQA ARMREKYLRA VLRQDVGYFD LHVTSTSDVI TSISSDSLVI QDFLSEKLPN FLMNASAFVA SYIVSFILMW RLTIVGFPFI ILLLVPGLMY 0201: GRALVSISRK IHEQYNEAGS IAEQAISSVR TVYAFGSENK MIGKFSTALR GSVKLGLRQG LAKGITIGSN GVTHAIWAFL TWYGSRLVMN HGSKGGTVFV 0301: VISCITYGGV SLGQSLSNLK YFSEAFVAWE RILEVIKRVP DIDSNKKEGQ ILERMKGEVE FNHVKFTYLS RPETTIFDDL CLKIPAGKTV ALVGGSGSGK 0401: STVISLLQRF YDPIAGEILI DGVSIDKLQV NWLRSQMGLV SQEPVLFATS ITENILFGKE DASLDEVVEA AKASNAHTFI SQFPLGYKTQ VGERGVQMSG 0501: GQKQRIAIAR AIIKSPKILL LDEATSALDS ESERVVQESL DNASIGRTTI VIAHRLSTIR NADVICVIHN GQIVETGSHE ELLKRIDGQY TSLVSLQQME 0601: NEESNVNINV SVTKDQVMSL SKDFKYSQHN SIGSTSSSIV TNVSDLIPND NQPLVPSFTR LMVMNRPEWK HALYGCLSAA LVGVLQPVSA YSAGSVISVF 0701: FLTSHDQIKE KTRIYVLLFV GLAIFSFLVN ISQHYGFAYM GEYLTKRIRE QMLSKILTFE VNWFDIDDNS SGAICSRLAK DANVVRSMVG DRMSLLVQTI 0801: SAVIIACIIG LVIAWRLAIV MISVQPLIVV CFYTQRVLLK SLSEKASKAQ DESSKLAAEA VSNIRTITAF SSQERIIKLL KKVQEGPRRE SVHRSWLAGI 0901: VLGTSRSLIT CTSALNFWYG GRLIADGKIV SKAFFEIFLI FVTTGRVIAD AGTMTTDLAR GLDAVGSVFA VLDRCTTIEP KNPDGYVAEK IKGQITFLNV 1001: DFAYPTRPDV VIFENFSIEI DEGKSTAIVG TSGSGKSTII GLIERFYDPL KGTVKIDGRD IRSYHLRSLR KYISLVSQEP MLFAGTIREN IMYGGTSDKI 1101: DESEIIEAAK AANAHDFITS LSNGYDTNCG DKGVQLSGGQ KQRIAIARAV LKNPSVLLLD EATSALDSKS ERVVQDALER VMVGRTSIMI AHRLSTIQNC 1201: DMIVVLGKGK IVESGTHSSL LEKGPTGTYF SLAGIQRTLC |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)