AT3G28250.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.942 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Carbohydrate-binding X8 domain superfamily protein | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Carbohydrate-binding X8 domain superfamily protein; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946); BEST Arabidopsis thaliana protein match is: Carbohydrate-binding X8 domain superfamily protein (TAIR:AT2G43670.1); Has 1190 Blast hits to 1144 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 1188; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:10533324..10533689 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 13875.70 Da | ||||||||||||||||||||||||
| IEP (calculated) | 4.51 | ||||||||||||||||||||||||
| GRAVY (calculated) | 0.34 | ||||||||||||||||||||||||
| Length | 121 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MQWCVAKPGT LTEQLINNLN YACSIVDCQI ISTRGACYSP DNIYNMASVV MNLYYQAEGR NFWNCNFGDS GLVAITDPSE FYLSLLFHYT IIYVLFFCLI 101: SNYFCFRQAM EVANMNFVCK A |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)