AT3G28230.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: gene silencing; LOCATED IN: nucleus; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Something about silencing protein 10 (Sas10), C-terminal (InterPro:IPR018972); BEST Arabidopsis thaliana protein match is: Sas10/U3 ribonucleoprotein (Utp) family protein (TAIR:AT2G43650.1); Has 374 Blast hits to 360 proteins in 175 species: Archae - 0; Bacteria - 4; Metazoa - 107; Fungi - 115; Plants - 56; Viruses - 0; Other Eukaryotes - 92 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:10529314..10530199 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 20183.30 Da | ||||||||||||||||||||||||
| IEP (calculated) | 11.23 | ||||||||||||||||||||||||
| GRAVY (calculated) | -1.51 | ||||||||||||||||||||||||
| Length | 173 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKIDNAREEK KKKGQKRKHQ NDQADMEMLK LRAALEGKHR SNGSTVLKSA KAQKRQKSED SEDEFYRQVK QKQEAKKAAK AEIYSRKPYL IPSSPDLVDG 101: RRLISNQMAS NRGLTRKRNK DHKNPRKKYR DQHKKIVINR KGQVRDIRTQ VGPYAGETRG INPYTSRSIR IKN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)