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AT3G27830.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31932409 (2020): plastid
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:23851315 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:23549413 (2013): plastid
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22550958 (2012): plastid
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:21531424 (2011): plastid
  • PMID:21311031 (2011): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:16648217 (2006): plastid
  • PMID:15322131 (2004): plastid
  • PMID:15028209 (2004): plastid
  • PMID:14729914 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ribosomal protein L12-A
Curator
Summary (TAIR10)
50S ribosomal protein L12-A
Computational
Description (TAIR10)
ribosomal protein L12-A (RPL12-A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: in 7 components; EXPRESSED IN: cotyledon, juvenile leaf, leaf; CONTAINS InterPro DOMAIN/s: Ribosomal protein L7/L12 (InterPro:IPR000206), Ribosomal protein L12, chloroplast (InterPro:IPR015608), Ribosomal protein L7/L12, oligomerisation (InterPro:IPR008932), Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like (InterPro:IPR014719), Ribosomal protein L7/L12, C-terminal (InterPro:IPR013823); BEST Arabidopsis thaliana protein match is: ribosomal protein L12-C (TAIR:AT3G27850.1); Has 8536 Blast hits to 8536 proteins in 2747 species: Archae - 0; Bacteria - 5673; Metazoa - 193; Fungi - 128; Plants - 248; Viruses - 0; Other Eukaryotes - 2294 (source: NCBI BLink).
Protein Annotations
BioGrid:7733eggNOG:COG0222eggNOG:KOG1715EMBL:AP000371
EMBL:AY054567EMBL:AY056124EMBL:AY136308EMBL:BT000419
EMBL:BT006058EMBL:BT006568EMBL:CP002686EMBL:X68046
EMBL:Z17719EnsemblPlants:AT3G27830EnsemblPlants:AT3G27830.1entrez:822403
Gene3D:3.30.1390.10GeneID:822403Genevisible:P36210GO:GO:0000311
GO:GO:0003735GO:GO:0006412GO:GO:0009295GO:GO:0009506
GO:GO:0009507GO:GO:0009535GO:GO:0009570GO:GO:0009579
GO:GO:0009941Gramene:AT3G27830.1HAMAP:MF_00368HOGENOM:HOG000248813
InParanoid:P36210IntAct:P36210InterPro:IPR000206InterPro:IPR008932
InterPro:IPR013823InterPro:IPR014719KEGG:ath:AT3G27830KO:K02935
ncoils:CoilOMA:RTTTIEFPaxDb:P36210Pfam:P36210
Pfam:PF00542Pfam:PF16320PhylomeDB:P36210PIR:A53394
PRIDE:P36210PRO:PR:P36210ProDom:PD001326ProteinModelPortal:P36210
Proteomes:UP000006548RefSeq:NP_189421.1SMR:P36210STRING:3702.AT3G27830.1
SUPFAM:SSF48300SUPFAM:SSF54736TAIR:AT3G27830tair10-symbols:RPL12
tair10-symbols:RPL12-ATIGRfam:TIGR00855TIGRFAMs:TIGR00855UniGene:At.20381
UniGene:At.251UniProt:P36210
Coordinates (TAIR10) chr3:+:10318576..10319151
Molecular Weight (calculated) 20075.90 Da
IEP (calculated) 5.37
GRAVY (calculated) 0.01
Length 191 amino acids
Sequence (TAIR10)
(BLAST)
001: MASTTLSIAT TIRSSSYPTL ASINHFPSRT TTIEFPSRFG GGSSSTLTHR ATHLRPIAAV EAPEKIEKIG SEISSLTLEE ARILVDYLQD KFGVSPLSLA
101: PAAAAVAAPA DGGAAAVVEE QTEFDVVINE VPSSSRIAVI KAVRALTSLA LKEAKELIEG LPKKFKEGIT KDEAEEAKKT LEEAGAKVSI A
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)