AT3G27785.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : myb domain protein 118 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
putative transcription factor (MYB118) | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
myb domain protein 118 (MYB118); FUNCTIONS IN: DNA binding, transcription activator activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: rosette leaf, embryo, fruit, cauline leaf, flower; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 115 (TAIR:AT5G40360.1); Has 9843 Blast hits to 8432 proteins in 561 species: Archae - 0; Bacteria - 0; Metazoa - 1160; Fungi - 755; Plants - 5742; Viruses - 7; Other Eukaryotes - 2179 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:10288767..10290712 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 49494.90 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.69 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.68 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 437 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEFESVFKMH YPYLAAVIYD DSSTLKDFHP SLTDDFSCVH NVHHKPSMPH TYEIPSKETI RGITPSPCTE AFEACFHGTS NDHVFFGMAY TTPPTIEPNV 101: SHVSHDNTMW ENDQNQGFIF GTESTLNQAM ADSNQFNMPK PLLSANEDTI MNRRQNNQVM IKTEQIKKKN KRFQMRRICK PTKKASIIKG QWTPEEDKLL 201: VQLVDLHGTK KWSQIAKMLQ GRVGKQCRER WHNHLRPDIK KDGWTEEEDI ILIKAHKEIG NRWAEIARKL PGRTENTIKN HWNATKRRQH SRRTKGKDEI 301: SLSLGSNTLQ NYIRSVTYND DPFMTANANA NIGPRNMRGK GKNVMVAVSE YDEGECKYIV DGVNNLGLED GRIKMPSLAA MSASGSASTS GSASGSGSGV 401: TMEIDEPMTD SWMVMHGCDE VMMNEIALLE MIAHGRL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)