AT3G27330.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.987 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : zinc finger (C3HC4-type RING finger) family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Protein of unknown function DUF23 (InterPro:IPR008166); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF23) (TAIR:AT5G40720.1); Has 9172 Blast hits to 9085 proteins in 2351 species: Archae - 0; Bacteria - 208; Metazoa - 7155; Fungi - 537; Plants - 665; Viruses - 17; Other Eukaryotes - 590 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:10116950..10120516 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 104147.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.98 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.50 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 913 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKVRRKLGGG CGGDVVVSWR TFFWFVILFV FSFVLFSTMF IFKGKFRPVV RSTISFSTAV TARAVFRESI SSSPAVTIRE AVKLPEQTLV FLKYPQSRRL 101: FTKDDLICVF SGSSKLRKVY PTAVDRDKFG GQIVRCPETP RGYTISLAVS RWTTDDHLPA GPTHRYDWLV YDAVIDYDNS TVVFVKGLNL RPGRVADVSR 201: YECVYGWDFA KHNRLIRSDV ITAAQEIVRC RTPLAVLDGP KAARGPVKVS VRIKGGTGML PSIAQPVRII NPPRKKPFQM CVCTMTRNAA AVLREWVMYH 301: AGIGVQRWFI YDNNSDDDII AEIENLERRG YNISRHFWPW IKTQEAGFSN CAIRAKSDCD WIAFIDVDEF FYIPSGETLT SVIRNYTTTD SIGEIRTPCH 401: SFGPSGLRSR PRSGVTSGYT CRVVLPERHK SIIRPEAMNA TLINVVHHFH LRDGFTFADM DKDIMVINHY KYQVWEVFKE KFYRRVATYV ADWQNEENVG 501: SRDRAPGLGT RPVEPSDWAE RFCEVNDTGL RDQVFEKFKD KKTQRLVWEK AEEDDNIQRM VSETPLRVTN RSGDGSNGSK EVSIAREKNG ENAEIFISPR 601: FKSAAAMAGW DEEDLIIASF VVDDTPERSS SKRRRRSNLL FKSTPPSGSS RRNQRVKQSL VPLPVIDLDK VIRHEEEKSA EKKKKKREME TETKEEKKID 701: KDEKSLSDHV VLPCIDKLRD ELSCAICLEI CFEPSTTTCG HSFCKKCLRS AADKCGRKCP KCRQLIGNGR YCTVNTVLWN TIQLLFPKEV EAQRAASANL 801: KGKETPSPRN PNQRLRSRNR ETALFQERLQ REDISRLLVS EERSERSERR RRSTSMRLDQ NRDAALAMRL QRQEFASAFG ATTAETSSSS VSTLSRARAN 901: LQAMASRAVR RQG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)