AT3G27040.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.971 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Meprin and TRAF (MATH) homology domain-containing protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Meprin and TRAF (MATH) homology domain-containing protein; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: TRAF-like family protein (TAIR:AT2G01790.1); Has 987 Blast hits to 591 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 46; Plants - 924; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:9974912..9977927 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 41267.30 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.32 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.44 | ||||||||||||||||||||||||||||||||||||
| Length | 358 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGNHQADKKF AWVIKNFNSL DTTRVYSDTF KAGRCKWRLV AYPKRRDRYT TSFSLFLCVP DSESLPSGWR RRAKLIGYNK KYSSSRTMGN HQADKKFTWV 101: IKNYNSLGSG SVYSDTFKAG RCKWRLLAFP KGNNIYDYFF LYICVPNSES LPSGWRRRAK VSFTMVNQIP GGLSQQREAV YWFDEKDTTH GFESMFLLSE 201: IQSSDKGFLV NGEVKIVAEV DVLEVIGELD VPEEPERIDI NGFQVPASQV ESMNSLFEKY RGFASKIFPK NQHLRKTFLD VVLSMTEILC KFPEELSSGD 301: LAEAYSALRF VTKAGFKLDW LEKKLKETGK SRLQEIEEDL KDLKVKCADM DALLDFLR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)